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slow5tools-v0.7.0
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@github-actions github-actions released this 07 Oct 23:56
· 196 commits to master since this release
v0.7.0
187c9d8

  • New subtool called skim was added (still beta - use with caution and suggestions welcome)!

    Skims through requested components in a SLOW5/BLOW5 file. If no options are provided, all the SLOW5 records except the raw signal will be printed.
Usage: slow5tools skim [OPTIONS] [SLOW5_FILE]

OPTIONS:
    -t, --threads INT             number of threads [8]
    -K, --batchsize INT           number of records loaded to the memory at once [4096]
    --hdr                         print the header only
    --rid                         print the list of read ids only
    -h, --help                    display this message and exit

    Examples:

    # print all per-read metadata (except the raw signal)
slow5tools skim file.blow5
#print the list of read IDs
slow5tools skim --rid file.blow5
#print the SLOW5 header
slow5tools skim --hdr file.blow5

  • 3ff8bbb: improving search files log message in f2s (hiruna72)

  • 4d8595c: include cases where certain field values can be zero(hiruna72)

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