Skip to content

Commit

Permalink
Merge pull request #43 from haesleinhuepf/docs
Browse files Browse the repository at this point in the history
Updated docs & bump version
  • Loading branch information
haesleinhuepf authored Dec 20, 2022
2 parents b3bd537 + 81803a9 commit 05d7901
Show file tree
Hide file tree
Showing 3 changed files with 15 additions and 2 deletions.
13 changes: 13 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,19 @@ Also these measurements can be visualized by double-clicking table headers:

![img_1.png](measure_point_coordinate.png)

## Working with time-lapse and tracking data

Note that tables for time-lapse data should include a column named "frame", which indicates which slice in
time the given row refers to. If you want to import your own csv files for time-lapse data make sure to include this column.
If you have tracking data where each column specifies measurements for a track instead of a label at a specific time point,
this column must not be added.

In case you have 2D time-lapse data you need to convert it into a suitable shape using the function: `Tools > Utilities > Convert 3D stack to 2D time-lapse (time-slicer)`,
which can be found in the [napari time slicer](https://www.napari-hub.org/plugins/napari-time-slicer).

Last but not least, make sure that in case of time-lapse data the label image has labels that are subsquently labeled per timepoint.
E.g. a dataset where label 5 is missing at timepoint 4 may be visualized incorrectly.

## Usage, programmatically

You can also control the tables programmatically. See this
Expand Down
2 changes: 1 addition & 1 deletion napari_skimage_regionprops/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
try:
from ._version import version as __version__
except ImportError:
__version__ = "0.5.7"
__version__ = "0.6.0"


@napari_hook_implementation
Expand Down
2 changes: 1 addition & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ def read(fname):
packages=find_packages(),
python_requires='>=3.8',
install_requires=requirements,
version='0.5.7',
version='0.6.0',
#use_scm_version=use_scm,
setup_requires=['setuptools_scm'],
classifiers=[
Expand Down

0 comments on commit 05d7901

Please sign in to comment.