Psminer, an R package for analysis of the nf-core/PathogenSurveillance pipeline

psminer is an R package with functions that can read, summarize, plot, and manipulate data produced by the nextflow pipeline pathogensurveillance.

Installation

You can also install the development version for the newest features, bugs, and bug fixes in R as follows:

install.packages("devtools")
devtools::install_github("grunwaldlab/psminer")

# Fetch DOI to `bibtex` format
doi <- "https://doi.org/10.1002/cpbi.102"
bibtex_citation <- get_bibtex_from_doi(doi, format = "bibtex")

License

This work is subject to the MIT License.