Adding options json to automated test run

getwilds · Mar 13, 2024 · 74a1a07 · 74a1a07
1 parent db26b33
commit 74a1a07
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/cromwell-test-run.yml b/.github/workflows/cromwell-test-run.yml
@@ -26,7 +26,7 @@ jobs:
         run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar
       -
         name: Execute Test Run of WDL Workflow
-        run: java -jar cromwell-86.jar run fastq-to-cram.wdl -i fastq-to-cram-inputs.json
+        run: java -jar cromwell-86.jar run fastq-to-cram.wdl --inputs fastq-to-cram-inputs.json --options fastq-to-cram-options.json