Updating Formatting According to WILDS Guidelines #5
Workflow file for this run
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| name: Cromwell Test Run | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| jobs: | |
| testrun: | |
| runs-on: ubuntu-latest | |
| permissions: write-all | |
| steps: | |
| - | |
| name: Checkout | |
| uses: actions/checkout@v4 | |
| - | |
| name: Set Up Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '21' | |
| - | |
| name: Pull Cromwell Jarfile | |
| run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar | |
| - | |
| name: Execute Test Run of WDL Workflow | |
| run: java -jar cromwell-86.jar run fastq-to-cram.wdl --inputs fastq-to-cram-inputs.json --options fastq-to-cram-options.json | |