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Merge pull request #49 from getwilds/sra-tools
adding SRA Toolkit Docker container
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| # Using the miniforge base image | ||
| FROM condaforge/miniforge3:24.7.1-2 | ||
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| # Adding labels for the GitHub Container Registry | ||
| LABEL org.opencontainers.image.title="sra-tools" | ||
| LABEL org.opencontainers.image.description="Container image for the use of SRA Toolkit in FH DaSL's WILDS" | ||
| LABEL org.opencontainers.image.version="3.1.1" | ||
| LABEL org.opencontainers.image.authors="[email protected]" | ||
| LABEL org.opencontainers.image.url=https://hutchdatascience.org/ | ||
| LABEL org.opencontainers.image.documentation=https://getwilds.org/ | ||
| LABEL org.opencontainers.image.source=https://github.com/getwilds/wilds-docker-library | ||
| LABEL org.opencontainers.image.licenses=MIT | ||
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| # Switching from hard-links to copies and installing sra-tools, pfastqdump | ||
| RUN conda config --set always_copy true \ | ||
| && conda install -y -c bioconda sra-tools=3.1.1 parallel-fastq-dump=0.6.7 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| # Using the miniforge base image | ||
| FROM condaforge/miniforge3:24.7.1-2 | ||
|
|
||
| # Adding labels for the GitHub Container Registry | ||
| LABEL org.opencontainers.image.title="sra-tools" | ||
| LABEL org.opencontainers.image.description="Container image for the use of SRA Toolkit in FH DaSL's WILDS" | ||
| LABEL org.opencontainers.image.version="latest" | ||
| LABEL org.opencontainers.image.authors="[email protected]" | ||
| LABEL org.opencontainers.image.url=https://hutchdatascience.org/ | ||
| LABEL org.opencontainers.image.documentation=https://getwilds.org/ | ||
| LABEL org.opencontainers.image.source=https://github.com/getwilds/wilds-docker-library | ||
| LABEL org.opencontainers.image.licenses=MIT | ||
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| # Switching from hard-links to copies and installing sra-tools, pfastqdump | ||
| RUN conda config --set always_copy true \ | ||
| && conda install -y -c bioconda sra-tools=3.1.1 parallel-fastq-dump=0.6.7 |