Tissue NUKEM 3D

##Authors:

• Guillaume Cerutti ([email protected])
• Sophie Ribes ([email protected])

##Institutes:

• Inria (http://www.inria.fr)
• RDP, ENS de Lyon - UMR 5667

##License:

• Cecill-C
• Uses CZI file reader developed by Christoph Gohlke http://www.lfd.uci.edu/~gohlke/
• Uses LSM file reader developed by Charles Roduit [email protected]

##Description

An OpenAlea library for the detection and quantitative data extraction from microscopy images of cell nuclei.

##Requirements

• NumPy / SciPy
• OpenAlea.Deploy (https://github.com/openalea/deploy)
• OpenAlea.Core (https://github.com/openalea/openalea)
• OpenAlea.Container (https://github.com/openalea/openalea-components)
• OpenAlea.Image (https://github.com/openalea/openalea-components)
• OpenAlea.CellComplex (https://github.com/VirtualPlants/cellcomplex)

##Installation

python setup.py develop --user