[WIP] ProteoRE prot_features_Uniprot_3species #603
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combesf
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tools/proteore_prot_features_3orga/add_protein_features_3orga.xml
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| <option value="copy_paste">Copy/paste your list of IDs</option> | ||
| </param> | ||
| <when value="copy_paste"> | ||
| <param name="genelist" type="text" label="Enter a list of IDs separated by tab, space or carriage return into the form field" help=""> |
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I did not find out what carriage means; why not just sticking to one delimiter option either space or comma as it has anyway to be input manually
tools/proteore_prot_features_3orga/add_protein_features_3orga.xml
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| <tool id="prot_features_3orga" name="add protein features" version="2021.06.21"> | |||
| <description>[UniProt, Human, Mouse, Rat] | |||
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this description will be added after the name; you might want to write a full sentence here about the tool
tools/proteore_prot_features_3orga/add_protein_features_3orga.xml
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| </inputs> | ||
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| <outputs> | ||
| <data name="output" format="tsv" label="Add_${org}_ProteinFeatures_on_${inputtype.genelist.name}"> |
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more common naming of output files would be: ${tool.name} on ${on_string}: ProteinFeatures
| <data name="output" format="tsv" label="Add_${org}_ProteinFeatures_on_${inputtype.genelist.name}"> | ||
| <filter>inputtype['filetype'] == 'file'</filter> | ||
| </data> | ||
| <data name="output2" format="tsv" label="Add_${org}_ProteinFeatures_UP"> |
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same here: more common naming of output files would be: ${tool.name} on ${on_string}: ProteinFeatures_UP
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only "tabular" modif is done
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| Q3TIA9 | |||
| Q9D566 | |||
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I would suggest using tabular files for all txt files with columns
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