Build py3.13 wheel for pysam 0.22.1 #178
Workflow file for this run
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| name: Build and upload wheels | |
| on: [push, pull_request] | |
| env: | |
| CIBW_BUILD: 'cp38-* cp39-* cp310-* cp311-* cp312-* cp313-*' | |
| CIBW_SKIP: '*-musllinux_*' | |
| concurrency: | |
| # Group runs by PR, but keep runs on the default branch separate | |
| # because we do not want to cancel wheel uploads | |
| group: pr-${{ github.ref == 'refs/heads/main' && github.run_number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| recipes_found: ${{ steps.recipes_changes.outputs.recipes_found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # The range of commits to check for changes is: | |
| # - `origin/main...` for all events happening on a feature branch | |
| # - for events on the main branch we compare against the sha before the event | |
| # (note that this does not work for feature branch events since we want all | |
| # commits on the feature branch and not just the commits of the last event) | |
| # - for pull requests we compare against the 1st ancestor, given the current | |
| # HEAD is the merge between the PR branch and the base branch | |
| - name: Set commit range | |
| id: commit_range_step | |
| run: | | |
| if [ "${{ github.event_name }}" = 'push' -a "${{github.ref}}" != 'refs/heads/main' ]; then | |
| # push to a feature branch | |
| git fetch origin main | |
| commit_range='origin/main...' | |
| elif [ "${{ github.event_name }}" = 'push' -a "${{ github.ref }}" = 'refs/heads/main' ]; then | |
| # push to the main branch, e.g. merge | |
| commit_range="${{ github.event.before }}.." | |
| else | |
| # pull request | |
| commit_range='HEAD~..' | |
| fi | |
| echo "commit_range=$commit_range" >> $GITHUB_OUTPUT | |
| - name: Detect changes to recipes/ | |
| id: recipes_changes | |
| run: | | |
| touch duplicated_recipe_folders.txt | |
| while read op path; do | |
| case "$op" in | |
| A|M) | |
| echo "${path}" | cut -d '/' -f1,2 >> duplicated_recipe_folders.txt | |
| ;; | |
| esac | |
| done < <(git diff --color=never --name-status '${{ steps.commit_range_step.outputs.commit_range }}' -- recipes/) | |
| sort -u duplicated_recipe_folders.txt > recipe_list.txt | |
| cat recipe_list.txt | |
| if [ -s recipe_list.txt ]; then | |
| recipes_found=true | |
| else | |
| recipes_found=false | |
| fi | |
| echo "recipes_found=$recipes_found" >> $GITHUB_OUTPUT | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: recipe_list | |
| path: recipe_list.txt | |
| build: | |
| needs: setup | |
| if: ${{ needs.setup.outputs.recipes_found == 'true' }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: recipe_list | |
| path: ../workflow_artifacts/ | |
| - name: Install required Python packages | |
| run: python -m pip install build cibuildwheel PyYAML requests | |
| - name: Set up QEMU to build non-native architectures | |
| if: runner.os == 'Linux' | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Build wheels | |
| run: | | |
| while read -r folder; do | |
| python3 wheel_builder.py "$folder"; | |
| done < ../workflow_artifacts/recipe_list.txt | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheelhouse-${{ matrix.os }} | |
| path: wheelhouse/ | |
| deploy: | |
| name: Deploy Wheels | |
| needs: build | |
| if: ${{ github.ref == 'refs/heads/main' && github.event_name == 'push' && github.repository_owner == 'galaxyproject' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| merge-multiple: true | |
| pattern: wheelhouse-* | |
| path: wheelhouse/ | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - name: Setup deploy environment | |
| run: python3 -m pip install s3pypi | |
| - name: Deploy wheels | |
| run: s3pypi upload ./wheelhouse/* --bucket "$S3_BUCKET" --region "$S3_REGION" --put-root-index --index.html --s3-put-args 'ACL=public-read' --force | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| S3_BUCKET: galaxy-wheels | |
| S3_REGION: us-east-2 |