Update tutorial.md #5602
Open
Update tutorial.md #5602
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| @@ -63,10 +63,10 @@ In this tutorial will use the following datasets: | |||
| ## [A] Marker Genes: | |||
|
|
|||
| We'll start with two input datasets of marker genes (Study sets): | |||
| * **Marker genes per cell cluster:** This dataset lists the genes that are significantly different in each cell cluster. | |||
| * **Marker genes per condition (wt and ko):** This dataset lists the genes that are significantly different between the wild-type (wt) and knockout (ko) conditions. | |||
| * **Marker genes per cell cluster:** This dataset lists the genes that are differentially enriched different in each cell cluster. | |||
There was a problem hiding this comment.
Suggested change
| * **Marker genes per cell cluster:** This dataset lists the genes that are differentially enriched different in each cell cluster. | |
| * **Marker genes per cell cluster:** This dataset lists the genes that are differentially enriched in each cell cluster. |
| @@ -134,7 +134,7 @@ To perform GO enrichment analysis on each cell cluster individually, we need to | |||
| > 1. {% tool [Split file](toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4) %} with the following parameters: | |||
| > - {% icon param-file %} *"File to select"*: `Markers_cluster` (Input dataset) | |||
| > - *"on column"*: `c1` | |||
| > - *"Include the header in all splitted files?"*: `Yes` | |||
| > - *"Include the header in all split files?"*: `Yes` | |||
There was a problem hiding this comment.
Suggested change
| > - *"Include the header in all split files?"*: `Yes` | |
| > - *"Include the header in all splitted files?"*: `Yes` |
There was a problem hiding this comment.
Unfortunately, the tool itself says 'splitted', so we have to make sure the tutorial text matches the tool text in the Graphical User Interface / Galaxy interface, otherwise people can get confused.
|
Some great catches here, thanks! Check the suggestions above and commit or change, and we should be able to review and merge this! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
TODO: