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New Evaluating Reference Data for Bulk RNA Deconvolution tutorial #5549

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New Evaluating Reference Data for Bulk RNA Deconvolution tutorial #5549

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d64f9ca
add initial tutorial
hexhowells Oct 5, 2024
471ecd7
Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial
hexhowells Oct 5, 2024
ba0299a
add introduction and agenda
hexhowells Oct 5, 2024
3517cdb
update processing single-cell data section
hexhowells Oct 15, 2024
9cb86a0
Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial
hexhowells Oct 15, 2024
4fd1de0
update visualise results section
hexhowells Oct 15, 2024
d48d424
update lformatting for the lst of fields parameterrs
hexhowells Oct 15, 2024
6d7aacc
remove newline in scatterplot tool metadata
hexhowells Oct 15, 2024
655ac6b
add scatterplot tool nstrution forrNNLS
hexhowells Oct 15, 2024
68c1216
re-order remove header tool before combine collections
hexhowells Oct 15, 2024
8776cfc
Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial
hexhowells Nov 4, 2024
b9eea60
update visualisation and metrics section
hexhowells Nov 4, 2024
ee63844
Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial
hexhowells Nov 5, 2024
51cbbec
add equation diagrams
hexhowells Nov 8, 2024
0c2c3a0
Merge branch 'deconvolution-evaluation-tutorial' of https://github.co…
hexhowells Nov 8, 2024
ba4a59d
add compare scatterplots image
hexhowells Nov 8, 2024
bac873c
update tutorial
hexhowells Nov 8, 2024
3aaf9f1
add answer key to scatterplot question
hexhowells Nov 8, 2024
c0784f1
fix advanced cut tool parameter
hexhowells Nov 8, 2024
6bcbb47
add explaination of RMSE
hexhowells Nov 8, 2024
a867acb
add metric analysis
hexhowells Nov 8, 2024
1cb54c0
add violin plot tools
hexhowells Nov 8, 2024
f4a1f70
change scatter plot names
hexhowells Nov 8, 2024
ad5ecec
add keys to metric equations
hexhowells Nov 11, 2024
ea372ba
add question box for violin plots
hexhowells Nov 11, 2024
f404f75
update metrics workflow
hexhowells Nov 12, 2024
ffb1d4b
minor updates to intro
hexhowells Nov 12, 2024
5f900c6
minor updates to get data section
hexhowells Nov 12, 2024
1369f39
add inspect single-cell data section
hexhowells Nov 12, 2024
dde437b
standardise header capitalisation
hexhowells Nov 12, 2024
5aa0582
update the process sc data section
hexhowells Nov 12, 2024
8b84b57
update pseudo-bulk section
hexhowells Nov 12, 2024
09baadf
update pseudo-bulk section
hexhowells Nov 12, 2024
759da5a
update pseudo-bulk section
hexhowells Nov 12, 2024
d413f95
update deconvolution section
hexhowells Nov 12, 2024
0d1337a
update visualise results section
hexhowells Nov 12, 2024
47edcdb
add some anaysis to the visualisation section
hexhowells Nov 12, 2024
82f3342
update scatter plot section
hexhowells Nov 12, 2024
f946ee9
add scatter and violin plots
hexhowells Nov 12, 2024
7202531
update scatter plot section
hexhowells Nov 13, 2024
d4d7be1
update violin plot section
hexhowells Nov 13, 2024
8e1eba3
minor update to scatter plot section
hexhowells Nov 13, 2024
47aa906
minor update to metric analyis section
hexhowells Nov 13, 2024
b72fc8c
update key points
hexhowells Nov 13, 2024
2ed4f10
add conclusion
hexhowells Nov 13, 2024
45c6ea6
add standard deviation section
hexhowells Nov 13, 2024
bcc2251
add congratulations icon
hexhowells Nov 13, 2024
e95f963
remove standard deviation section
hexhowells Nov 13, 2024
fe9a7e0
update workflow links
hexhowells Nov 13, 2024
d454879
add embedded workflows
hexhowells Nov 13, 2024
9d9a93d
minor updates/typo fixes
hexhowells Nov 14, 2024
cac4815
minor updates
hexhowells Nov 14, 2024
4f2e319
minor updates
hexhowells Nov 15, 2024
a63d832
minor updates
hexhowells Nov 15, 2024
36de17e
update second workflow
hexhowells Nov 18, 2024
469d11a
update results table
hexhowells Nov 18, 2024
5ab221a
update scatter plot size
hexhowells Nov 18, 2024
249b602
update plot images
hexhowells Nov 18, 2024
4abce18
update scatter plot questions
hexhowells Nov 18, 2024
09aca40
update the violin plot questions
hexhowells Nov 18, 2024
fbcf9d4
minor update
hexhowells Nov 18, 2024
7c1aa84
add punctuation
hexhowells Nov 19, 2024
8238341
Merge branch 'galaxyproject:main' into deconvolution-evaluation-tutorial
hexhowells Nov 19, 2024
c06186e
fix linting error
hexhowells Nov 20, 2024
27971e2
Merge branch 'deconvolution-evaluation-tutorial' of https://github.co…
hexhowells Nov 20, 2024
8f2f946
Merge branch 'main' into deconvolution-evaluation-tutorial
nomadscientist Nov 26, 2024
068476d
possibly fix linting issue
hexhowells Nov 27, 2024
39921ca
Merge branch 'deconvolution-evaluation-tutorial' of https://github.co…
hexhowells Nov 27, 2024
86cfc3a
Merge branch 'main' into deconvolution-evaluation-tutorial
hexhowells Nov 27, 2024
21b16ab
change parameter names for 1st workflow
hexhowells Dec 3, 2024
793a88b
Merge branch 'deconvolution-evaluation-tutorial' of https://github.co…
hexhowells Dec 3, 2024
dd9cc6f
Merge branch 'main' into deconvolution-evaluation-tutorial
shiltemann Dec 5, 2024
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585 changes: 585 additions & 0 deletions topics/single-cell/tutorials/bulk-deconvolution-evaluate/tutorial.md
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