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[Google Form] New Recording Submission for Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C #5380

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[Google Form] New Recording Submission for Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C #5380

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12 changes: 12 additions & 0 deletions topics/assembly/tutorials/vgp_workflow_training/tutorial.md
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Expand Up @@ -58,12 +58,24 @@ recordings:
captioners:
- abueg
bot-timestamp: 1726177737
- youtube_id: TODO
length: 1H30M
galaxy_version: 24.1.3.dev0
date: '2024-09-30'
speakers:
- mschatz
- delphine-l
captioners:
- mschatz
- delphine-l
bot-timestamp: 1727666641


---




The {VGP}, a project of the {G10K} Consortium, aims to generate high-quality, near error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species ({% cite Rhie2021 %}). The VGP has developed a fully automated *de-novo* genome assembly pipeline, which uses a combination of three different technologies: Pacbio {HiFi}, {Hi-C} data, and (optionally) Bionano optical map data. The pipeline consists of nine distinct workflows. This tutorial provides a quick example of how to run these workflows for one particular scenario, which is, based on our experience, the most common: assembling genomes using {HiFi} Reads combined with {Hi-C} data (both generated from the same individual).

> <agenda-title></agenda-title>
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