Code

New Single Cell Tutorial in R#4141

Code

Merged

hexylena merged 86 commits intogalaxyproject:maingalaxyproject/training-material:mainfrom Camila-goclowski:Filter,-Plot,-and-Explore_WIPCamila-goclowski/training-material:Filter,-Plot,-and-Explore_WIPCopy head branch name to clipboardOct 2, 2023

+889-38

Commits

Commits on May 17, 2023

• Edited text

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• Edited text

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• Preamble edited

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• Reformatted tutorial.md

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• added cluster labelling might change filtering

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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Commits on Jun 13, 2023

• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• remainder of tutorial added

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• reformatting

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• Merge branch 'Filter,-Plot,-and-Explore_WIP' of https://github.com/Camila-goclowski/training-material into Filter,-Plot,-and-Explore_WIP

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• removed tutorial.html per helena's rec

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• Helena's comments fixed--pt2

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• pt3

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Commits on Jun 29, 2023

• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• formatting changes

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Commits on Jul 10, 2023

• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• Merge branch 'Filter,-Plot,-and-Explore_WIP' of https://github.com/Camila-goclowski/training-material into Filter,-Plot,-and-Explore_WIP

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• code formatting fix

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• code formatting (equals) correction

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• code block formatting

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Commits on Jul 11, 2023

• authorship correction

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• recorrected contributors

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• jekyll fix--hopefully

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• fixed broken box?

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• jekyll fix in preamble

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• added first eight plots

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Commits on Jul 12, 2023

• code format test

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• fixed blocking issue at 141

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• another block fix

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Commits on Jul 13, 2023

• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• removed redundant library calling

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• made adding metadata a little less clunky

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• actually fixed block issue (extra space on 188)

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• added plots 9-12

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• added plots 13-17

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Commits on Aug 1, 2023

• formatting first half

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• finished first half formatting

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• second half formatting

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• almost done formatting -- missing 2 plots

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• added zonodo link

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• corrected and added final plots

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• line edits

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Commits on Aug 14, 2023

• line edits from Marisa

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Commits on Aug 16, 2023

• added where data comes from

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• added link to own history w/ data

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• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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• reformatted some tip/comment boxes

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• Merge branch 'Filter,-Plot,-and-Explore_WIP' of https://github.com/Camila-goclowski/training-material into Filter,-Plot,-and-Explore

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• DE box fix

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• function fixes

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• broken boxes ID'd by lint check

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• two more potentisl broken boxes

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• corrected broken links

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• reword

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Commits on Aug 23, 2023

• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/preamble.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/preamble.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/preamble.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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Commits on Aug 30, 2023

• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/tutorial.md

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• added zenodo and fixed hempty history

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• added zenodo link and fixed empty history link

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• Merge branch 'Filter,-Plot,-and-Explore_WIP' of https://github.com/Camila-goclowski/training-material into Filter,-Plot,-and-Explore

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Commits on Sep 15, 2023

• reorganized Get Data section

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• reformatted first hands on box in preamble

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• added plot 8 (genes x mito zoomed in)

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• added saving object and plots to end

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• linting error link removed

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Commits on Sep 21, 2023

• Merge branch 'galaxyproject:main' into Filter,-Plot,-and-Explore_WIP

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Commits on Sep 26, 2023

• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/preamble.md

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• added references for citations (tutorial.bib file)

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Commits on Sep 27, 2023

• replaced author list commas with "and"s in bib

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Commits on Oct 2, 2023

• Update topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio-WIP/preamble.md

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• fix citations

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• Merge branch 'Filter,-Plot,-and-Explore_WIP' of github.com:Camila-goclowski/training-material into Filter,-Plot,-and-Explore_WIP

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• rename folder

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• move folder

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• Update dependencies to try and fix htmlproofer

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