[WIP] Import Cancer learning path from Bioinformatics.ca

CONTRIBUTORS.yaml

@@ -95,6 +95,10 @@ almahmoud:
     name: Alex Mahmoud
     joined: 2019-06
 
+amcpherson:
+    name: Andrew McPherson
+    joined: 2022-11
+
 andreasrichter:
     name: Andreas Richter
     github: false
@@ -534,6 +538,10 @@ fmareuil:
     name: Fabien Mareuil
     joined: 2017-09
 
+fmgcavalli:
+    name: Florence Cavalli
+    joined: 2022-11
+
 frederikcoppens:
     name: Frederik Coppens
     joined: 2018-07
@@ -629,6 +637,9 @@ hexylena:
       lat: 51.91
       lon: 4.46
 
+hgibling:
+    name: Heather Gibling
+
 hmenager:
     name: Hervé Ménager
     joined: 2017-09
@@ -690,6 +701,10 @@ jaidevjoshi83:
     orcid: 0000-0001-7589-5230
     joined: 2020-11
 
+javier-diaz:
+    name: Javier Diaz
+    joined: 2022-11
+
 jbmihoub:
     name: Jean-Baptiste Mihoub
     email: [email protected]
@@ -870,6 +885,10 @@ Lain-inrae:
     joined: 2022-02
     elixir_node: fr
 
+larunerdman:
+    name: Lauren Erdman
+    joined: 2022-11
+
 lamouresparus:
     name: Love O'tudor
     email: [email protected]
@@ -1009,6 +1028,11 @@ mboudet:
     joined: 2021-05
     elixir_node: fr
 
+mbourgey:
+    name: Mathieu Bourgey
+    twitter: mbourgey
+    joined: 2022-11
+
 mccalluc:
     name: Chuck McCallum
     joined: 2018-06
@@ -1294,6 +1318,11 @@ rahmot:
     joined: 2021-10
     linkedin: rahmot-afolabi
 
+rdeborja:
+    name: Richard de Borja
+    joined: 2022-11
+    twitter: rdeborja
+
 r1corre:
     name: Erwan Corre
     email: [email protected]
@@ -1382,6 +1411,10 @@ shiltemann:
       lat: 51.912
       lon: 4.462
 
+shraddhapai:
+    name:  Shraddha Pai
+    joined: 2022-11
+
 Shorla:
     name: Olushola Ogunkelu
     email: [email protected]
@@ -1425,6 +1458,11 @@ sophia120199:
     name: Sophia Hampe
     joined: 2023-04
 
+soranamorrissey:
+    name: Sorana Morrissy
+    github: false
+    joined: 2022-11
+
 stain:
     name: Stian Soiland-Reyes
     email: [email protected]
@@ -1434,7 +1472,7 @@ stain:
     elixir_node: uk
     location:
         country: UK
-        lat: 53.46724379071192 
+        lat: 53.46724379071192
         lon: -2.233631283105614
     fediverse: https://scholar.social/@soilandreyes
 
@@ -1541,6 +1579,10 @@ torfinnnome:
     joined: 2021-01
     elixir_node: "no"
 
+trevor-pugh:
+    name: Trevor Pugh
+    joined: 2022-11
+
 tseemann:
     name: Torsten Seemann
     joined: 2018-06
@@ -1572,6 +1614,10 @@ vdda:
     name: Victoria Dominguez del Angel
     joined: 2017-09
 
+veroniquevoisin:
+    name: Veronique Voisin
+    joined: 2022-11
+
 vivekbhr:
     name: Vivek Bhardwaj
     joined: 2017-09
@@ -1652,6 +1698,15 @@ paulzierep:
     joined: 2023-02
 
 # Funders / External Entities
+bioinformatics-ca:
+    name: Bioinformatics.ca
+    joined: 2022-11
+    avatar: "/topics/cancer-analysis/images/bioinformatics-ca.svg"
+    github: false
+    funder: true
+    funding_id:
+    funding_statement:
+
 carpentries:
     name: The Carpentries
     joined: 2021-09

_config.yml

@@ -71,6 +71,10 @@ abbreviate:
 icon-tag:
   announcement: fas fa-bullhorn
   arrow-keys: fa fa-arrows
+  arrow-down: fa fa-arrow-down
+  arrow-left: fa fa-arrow-left
+  arrow-right: fa fa-arrow-right
+  arrow-up: fa fa-arrow-up
   code-in: far fa-keyboard
   code-out: fas fa-laptop-code
   cofest: fas fa-users
@@ -119,6 +123,9 @@ icon-tag:
   galaxy-wf-new: fas fa-plus
   galaxy-wf-report-download: fas fa-print
   galaxy_instance: fas fa-external-link-alt
+  galaxy-panel-drag: fas fa-grip-lines-vertical
+  galaxy-panel-collapse-left: fas fa-chevron-left
+  galaxy-panel-collapse-right: fas fa-chevron-right
   github: fab fa-github
   gitter: fab fa-gitter
   gtn-theme: fas fa-palette
@@ -185,6 +192,8 @@ icon-tag:
   video: fas fa-video
   video-slides: far fa-play-circle
   zenodo_link: far fa-copy
+  zoom-in: fas fa-search-plus
+  zoom-out: fas fa-search-minus
 
 # To exclude in _site
 exclude:

_includes/funding-statement-short.md

@@ -9,11 +9,11 @@
 		<img class="funder-avatar" src="https://avatars.githubusercontent.com/{{ id }}" alt="Logo">
 		{% endif %}
 		</div>
-		<div>
 		{% if site.data.contributors[id].funding_id %}
+		<div>
 		{{ site.data.contributors[id].funding_id }}
-		{% endif %}
 		</div>
+		{% endif %}
 	</div>
 {% endfor %}
 {% endif %}

_includes/funding-statement.md

@@ -14,9 +14,11 @@
 		{% endif %}
 		<a href="{{ site.baseurl }}/hall-of-fame/{{ id }}/" class="btn btn-secondary">See Funder Profile</a>
 	</div>
+    {% if site.data.contributors[id].funding_statement %}
 	<div class="col-md-9 col-xs-12">
 		{{ site.data.contributors[id].funding_statement | markdownify }}
 	</div>
+    {% endif %}
 {% endfor %}
 </div>
 </div>

_plugins/notebook.rb

@@ -376,7 +376,7 @@ def self.render_rmarkdown(page_data, page_content, page_url, page_last_modified,
 
     final_content = [
       "# Introduction\n",
-      content.gsub(/```r/, '```{r}'),
+      content.gsub(/```(R|r)/, '```{r}'),
       "# Key Points\n"
     ] + page_data['key_points'].map { |k| "- #{k}" } + [
       "\n# Congratulations on successfully completing this tutorial!\n",