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topics/variant-analysis/tutorials/dunovo/data-library.yaml
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--- | ||
destination: | ||
type: library | ||
name: GTN - Material | ||
description: Galaxy Training Network Material | ||
synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org | ||
items: | ||
- name: Variant Analysis | ||
description: | | ||
Genetic differences (variants) between healthy and diseased tissue, | ||
between individuals of a population, or between strains of an organism | ||
can provide mechanistic insight into disease processes and the natural | ||
function of affected genes. | ||
The tutorials in this section show how to detect evidence for | ||
genetic variants in next-generation sequencing data, a process termed | ||
variant calling. | ||
Of equal importance, they also demonstrate how you can interpret, for | ||
a range of different organisms, the resulting sets of variants by | ||
predicting their molecular effects on genes and proteins, by | ||
annotating previously observed variants with published knowledge, and | ||
by trying to link phenotypes of the sequenced samples to their variant | ||
genotypes. | ||
items: | ||
- name: Calling very rare variants | ||
items: | ||
- name: 'DOI: 10.5281/zenodo.3554549' | ||
description: latest | ||
items: | ||
- url: https://zenodo.org/record/3554549/files/SRR1799908_forward.fastq | ||
src: url | ||
ext: | ||
info: https://doi.org/10.5281/zenodo.3554549 | ||
- url: https://zenodo.org/record/3554549/files/SRR1799908_reverse.fastq | ||
src: url | ||
ext: | ||
info: https://doi.org/10.5281/zenodo.3554549 |