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Update container_resolvers_config_file option
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It seems that this config option should be renamed from `containers_resolvers_config_file` to `container_resolvers_config_file` as indicated here: https://github.com/galaxyproject/galaxy/blob/b54e7a773fbb8476c24071798f648d7305051d2c/lib/galaxy/config/sample/galaxy.yml.sample#L714
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pauldg authored Oct 21, 2023
1 parent b8ff38e commit 5be2da6
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions topics/admin/tutorials/apptainer/tutorial.md
Original file line number Diff line number Diff line change
Expand Up @@ -185,7 +185,7 @@ Now, we will configure Galaxy to run tools using Apptainer containers, which wil
> tool_data_table_config_path: /cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml,/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml
> + # Tool Dependencies
> + dependency_resolvers_config_file: "{{ galaxy_config_dir }}/dependency_resolvers_conf.xml"
> + containers_resolvers_config_file: "{{ galaxy_config_dir }}/container_resolvers_conf.yml"
> + container_resolvers_config_file: "{{ galaxy_config_dir }}/container_resolvers_conf.yml"
> gravity:
> process_manager: systemd
> galaxy_root: "{{ galaxy_root }}/server"
Expand All @@ -195,7 +195,7 @@ Now, we will configure Galaxy to run tools using Apptainer containers, which wil
>
> +galaxy_config_templates:
> + - src: templates/galaxy/config/container_resolvers_conf.yml.j2
> + dest: "{{ galaxy_config.galaxy.containers_resolvers_config_file }}"
> + dest: "{{ galaxy_config.galaxy.container_resolvers_config_file }}"
> + - src: templates/galaxy/config/dependency_resolvers_conf.xml
> + dest: "{{ galaxy_config.galaxy.dependency_resolvers_config_file }}"
> +
Expand Down Expand Up @@ -393,14 +393,14 @@ After finishing the CVMFS tutorial, come back, and do this hands-on.
> <hands-on-title>Optional: Configure Galaxy to use Apptainer containers from CVMFS</hands-on-title>
>
> 1. Edit the `group_vars/galaxyservers.yml` file and add `containers_resolvers_config_file` and `galaxy_singularity_images_cvmfs_path`:
> 1. Edit the `group_vars/galaxyservers.yml` file and add `container_resolvers_config_file` and `galaxy_singularity_images_cvmfs_path`:
> {% raw %}
> ```yaml
> galaxy_singularity_images_cvmfs_path: "/cvmfs/singularity.galaxyproject.org/all/"
> galaxy_config:
> galaxy:
> ...
> containers_resolvers_config_file: "{{ galaxy_config_dir }}/container_resolvers_conf.yml"
> container_resolvers_config_file: "{{ galaxy_config_dir }}/container_resolvers_conf.yml"
> ```
> {% endraw %}
>
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