Merge pull request #4726 from nuwang/add_tpv_db_shortlink

Add short link to tpv shared db

topics/admin/tutorials/job-destinations/tutorial.md

@@ -473,7 +473,7 @@ on settings that have worked well in the usegalaxy.* federation. The rule file c
 >             function: map_tool_to_destination
 >             rules_module: tpv.rules
 >             tpv_config_files:
->    +          - https://raw.githubusercontent.com/galaxyproject/tpv-shared-database/main/tools.yml
+>    +          - https://gxy.io/tpv/db.yml
 >               - "{{ tpv_config_dir }}/tpv_rules_local.yml"
 >       tools:
 >         - class: local # these special tools that aren't parameterized for remote execution - expression tools, upload, etc
@@ -623,7 +623,7 @@ Such form elements can be added to tools without modifying each tool's configura
 >    +++ b/group_vars/galaxyservers.yml
 >    @@ -37,9 +37,17 @@ galaxy_job_config:
 >             tpv_config_files:
->               - https://raw.githubusercontent.com/galaxyproject/tpv-shared-database/main/tools.yml
+>               - https://gxy.io/tpv/db.yml
 >               - "{{ tpv_config_dir }}/tpv_rules_local.yml"
 >    +  resources:
 >    +    default: default

topics/admin/tutorials/troubleshooting/slides.html

@@ -508,7 +508,7 @@
 galaxy.web_stack.handlers INFO 2023-04-20 13:51:20,792 [pN:main.1,p:273250,tN:WSGI_0] (Job[id=2,tool_id=secure_hash_message_digest]) Handler '_default_' assigned using 'db-skip-locked' assignment method
 galaxy.tools.execute DEBUG 2023-04-20 13:51:20,797 [pN:main.1,p:273250,tN:WSGI_0] Created 1 job(s) for tool secure_hash_message_digest request (60.168 ms)
 galaxy.jobs.handler DEBUG 2023-04-20 13:51:20,879 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Grabbed Job(s): 2
-tpv.rules.gateway INFO 2023-04-20 13:51:20,920 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] loading tpv rules from: ['https://raw.githubusercontent.com/galaxyproject/tpv-shared-database/main/tools.yml', '/srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml']
+tpv.rules.gateway INFO 2023-04-20 13:51:20,920 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] loading tpv rules from: ['https://gxy.io/tpv/db.yml', '/srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml']
 tpv.rules.gateway INFO 2023-04-20 13:51:21,266 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Watching for changes in file: /srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml
 galaxy.util.watcher DEBUG 2023-04-20 13:51:21,266 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Watching for changes to file: /srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml
 tpv.core.entities DEBUG 2023-04-20 13:51:21,354 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Ranking destinations: [runner=local_runner, ... (line truncated)
@@ -579,7 +579,7 @@
 .reduce70[
 ```console
 galaxy.jobs.handler DEBUG 2023-04-20 13:51:20,879 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Grabbed Job(s): 2
-tpv.rules.gateway INFO 2023-04-20 13:51:20,920 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] loading tpv rules from: ['https://raw.githubusercontent.com/galaxyproject/tpv-shared-database/main/tools.yml', '/srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml']
+tpv.rules.gateway INFO 2023-04-20 13:51:20,920 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] loading tpv rules from: ['https://gxy.io/tpv/db.yml', '/srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml']
 tpv.rules.gateway INFO 2023-04-20 13:51:21,266 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Watching for changes in file: /srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml
 galaxy.util.watcher DEBUG 2023-04-20 13:51:21,266 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Watching for changes to file: /srv/galaxy/config/TPV_DO_NOT_TOUCH/tpv_rules_local.yml
 tpv.core.entities DEBUG 2023-04-20 13:51:21,354 [pN:handler_1,p:272701,tN:JobHandlerQueue.monitor_thread] Ranking destinations: [runner=local_runner, dest_name=local_env, min_accepted_cores=None, min_accepted_mem=None, min_accepted_gpus=None, max_accepted_cores=1, max_accepted_mem=None, max_accepted_gpus=None, tpv_dest_tags=<class 'tpv.core.entities.TagSetManager'> tags=[], handler_tags=None<class 'tpv.core.entities.Destination'> id=local_env, abstract=False, cores=None, mem=None, gpus=None, min_cores = None, min_mem = None, min_gpus = None, max_cores = None, max_mem = None, max_gpus = None, env=None, params={'tmp_dir': True}, resubmit=None, tags=<class 'tpv.core.entities.TagSetManager'> tags=[], rank=, inherits=None, context=None, rules={}, runner=local_runner, dest_name=singularity, min_accepted_cores=None, min_accepted_mem=None, min_accepted_gpus=None, max_accepted_cores=1, max_accepted_mem=None, max_accepted_gpus=None, tpv_dest_tags=<class 'tpv.core.entities.TagSetManager'> tags=[], handler_tags=None<class 'tpv.core.entities.Destination'> id=singularity, abstract=False, cores=None, mem=None, gpus=None, min_cores = None, min_mem = None, min_gpus = None, max_cores = None, max_mem = None, max_gpus = None, env=[{'name': 'LC_ALL', 'value': 'C'}, {'name': 'SINGULARITY_CACHEDIR', 'value': '/tmp/singularity'}, {'name': 'SINGULARITY_TMPDIR', 'value': '/tmp'}], params={'singularity_enabled': True}, resubmit=None, tags=<class 'tpv.core.entities.TagSetManager'> tags=[], rank=, inherits=None, context=None, rules={}, runner=slurm, dest_name=slurm, min_accepted_cores=None, min_accepted_mem=None, min_accepted_gpus=None, max_accepted_cores=24, max_accepted_mem=256, max_accepted_gpus=None, tpv_dest_tags=<class 'tpv.core.entities.TagSetManager'> tags=[], handler_tags=None<class 'tpv.core.entities.Destination'> id=slurm, abstract=False, cores=None, mem=None, gpus=None, min_cores = None, min_mem = None, min_gpus = None, max_cores = 2, max_mem = 8, max_gpus = None, env=[{'name': 'LC_ALL', 'value': 'C'}, {'name': 'SINGULARITY_CACHEDIR', 'value': '/tmp/singularity'}, {'name': 'SINGULARITY_TMPDIR', 'value': '/tmp'}], params={'singularity_enabled': True, 'native_specification': "--nodes=1 --ntasks=1 --cpus-per-task={cores} --time={params['walltime']}:00:00"}, resubmit={}, tags=<class 'tpv.core.entities.TagSetManager'> tags=[], rank=, inherits=singularity, context={}, rules={}] for entity: <class 'tpv.core.entities.Tool'> id=default, abstract=False, cores=1, mem=4, gpus=None, min_cores = None, min_mem = None, min_gpus = None, max_cores = None, max_mem = None, max_gpus = None, env=[], params={'walltime': 8}, resubmit={}, tags=<class 'tpv.core.entities.TagSetManager'> tags=[<Tag: name=scheduling, value=offline, type=TagType.REJECT>], rank=helpers.we, inherits=None, context={}, rules={} using custom function