Merge pull request #4966 from galaxyproject/video-library

[Video Library] Begin import of Gallantries video library to GTN (WIP)
galaxyproject · Jun 14, 2024 · 13f2db1 · 13f2db1
2 parents 911e298 + 0d30927
commit 13f2db1
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diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
@@ -66,8 +66,6 @@ jobs:
           npm install
           make rebuild-search-index ACTIVATE_ENV=pwd
           cat metadata/swagger.yaml | python bin/yaml2json.py > api/swagger.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/videos.json > metadata/video-library.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/sessions.json > metadata/session-library.json
           rdoc bin _plugins/ --output gtn_rdoc
 
       - name: Build Site

diff --git a/.github/workflows/google-form.yml b/.github/workflows/google-form.yml
@@ -1,4 +1,4 @@
-name: "[Cron] Update news from Google Form"
+name: "[Cron] Update news and recordings from Google Form"
 on:
   workflow_dispatch:
   schedule:
@@ -35,19 +35,57 @@ jobs:
           bundle pristine ffi
       # END Dependencies
 
-      - name: Update google news
+      - name: Update news from Google Form
         id: generate
         run: |
           echo "new_ids=$(bundle exec ruby bin/google-form-news.rb)" >> $GITHUB_OUTPUT
 
-      - name: Create Pull Request
+      - name: Create Pull Request for News
         # If it's not a Pull Request then commit any changes as a new PR.
         if: |
           github.event_name != 'pull_request' &&
           steps.generate.outputs.new_ids != '0'
         uses: peter-evans/create-pull-request@v3
         with:
-          title: Import news posts from Google Form
+          commit-message: Import news posts from Google Form
           branch-suffix: timestamp
-          commit-message: New News Post!
+          title: "[Google Form] New News Post!"
           add-paths: news/_posts/
+
+     - name: Update recordings from Google Form
+        id: recordings
+        run: |
+          echo "new_recordings=$(bundle exec ruby bin/google-form-recordings.rb)" >> $GITHUB_OUTPUT
+
+      - name: Create Pull Request for Recordings
+        # If it's not a Pull Request then commit any changes as a new PR.
+        if: |
+          github.event_name != 'pull_request' &&
+          steps.generate.outputs.new_recordings == 'true'
+        uses: peter-evans/create-pull-request@v3
+        with:
+          title: "[Google Form] New Recording Submission!"
+          branch-suffix: timestamp
+          commit-message: add new recording from Google Form submission
+          add-paths: topics/
+          committer: "Saskia Hiltemann <[email protected]>"
+          author: "Saskia Hiltemann <[email protected]>"
+          body: |
+            New recording submitted!
+
+            **Submission Process checklist**
+            - [x] **Instructor** Record video
+            - [x] **Instructor** Submit video via form
+            - [x] **GTN** Pull request made by bot
+            - [ ] **GTN** Check if adjustments to PR are necessary
+              - [ ] Check [Submissions Form](https://docs.google.com/spreadsheets/d/1iXjLlMEH5QMAMyUMHi1c_Lb7OiJhL_9hgJrtAsBoZ-Y/edit?usp=sharing)
+              - [ ] New contributors need to be added?
+            - [ ] **GTN** Upload video to [GalaxyProject YouTube](https://www.youtube.com/c/galaxyproject)
+              - [ ] **GTN** Add youtube video id to PR after upload
+            - [ ] **GTN** Put Autogenerated captions in Google Doc ([folder](https://drive.google.com/drive/folders/1liyqDQDbxMNXvpQIaqFmoE2fB2aJIH9N?usp=drive_link))
+            - [ ] **Instructor** Fix autogenerated captions, comment here when done
+            - [ ] **GTN** Upload fixed captions to YouTube
+            - [ ] **GTN** Add the people who did the captioning to this PR
+            - [ ] **GTN** Merge PR!
+
+
diff --git a/.github/workflows/monthly-release-backfill.yml b/.github/workflows/monthly-release-backfill.yml
@@ -69,8 +69,6 @@ jobs:
           npm install
           make rebuild-search-index ACTIVATE_ENV=pwd
           cat metadata/swagger.yaml | python bin/yaml2json.py > api/swagger.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/videos.json > metadata/video-library.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/sessions.json > metadata/session-library.json
           JEKYLL_ENV=production bundle exec jekyll build --strict_front_matter -d _site/training-material
         env:
           SOURCE_TAG: ${{ github.event.inputs.selected_tag }}

diff --git a/.github/workflows/monthly-release.yml b/.github/workflows/monthly-release.yml
@@ -71,8 +71,6 @@ jobs:
           npm install
           make rebuild-search-index ACTIVATE_ENV=pwd
           cat metadata/swagger.yaml | ruby bin/yaml2json.rb > api/swagger.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/videos.json > metadata/video-library.json
-          curl --retry 5 https://gallantries.github.io/video-library/api/sessions.json > metadata/session-library.json
           JEKYLL_ENV=production bundle exec jekyll build --strict_front_matter -d _site/training-material
         env:
           SOURCE_TAG: ${{ env.release_tag }}

diff --git a/CONTRIBUTORS.yaml b/CONTRIBUTORS.yaml
@@ -43,6 +43,12 @@ contributor2:
     halloffame: "no"
     joined: 2020-06
 
+# dummy contributor for video library
+awspolly:
+  halloffame: "no"
+  joined: 2024-05
+  name: Automated Text-to-Speech
+
 # our real contributors <3 (please add yourself in alphabetical order)
 
 a-asai:
@@ -143,6 +149,12 @@ andreasrichter:
     github: false
     joined: 2017-09
 
+andrewr:
+    name: Andrew Rajczewski
+    affiliations:
+      - minnesotauni
+    joined: 2024-05
+
 annatrigos:
     name: Anna Trigos
     github: false
@@ -675,6 +687,10 @@ EngyNasr:
       - uni-freiburg
       - elixir-europe
 
+ennovytje:
+    name: Yvonne Hiltemann
+    joined: 2024-05
+
 ecoissac:
     github: false
     name: Eric Coissac
@@ -715,10 +731,15 @@ cumbof:
     orcid: 0000-0003-2920-5838
     joined: 2018-02
 
+
 fidelram:
     name: Fidel Ramirez
     joined: 2017-09
 
+FilipposZ:
+   name: Filippos Zacharopoulos
+   joined: 2024-05
+
 foellmelanie:
     name: Melanie Föll
     email: [email protected]
@@ -1263,6 +1284,12 @@ lleroi:
     orcid: 0000-0003-3748-4179
     joined: 2021-11
 
+LonsBio:
+    name: Andrew Lonsdale
+    joined: 2024-05
+    affiliations:
+      - petermac
+
 loraine-gueguen:
     name: Loraine Guéguen
     joined: 2017-09
@@ -1280,6 +1307,12 @@ kkamieniecka:
     affiliations:
       - elixir-europe
 
+ksuderman:
+    name: Keith Suderman
+    joined: 2024-05
+    affiliations:
+      - johnshopkins
+
 poterlowicz-lab:
     name: Krzysztof Poterlowicz
     twitter: bioinfbrad
@@ -1306,6 +1339,12 @@ mjostaszewski:
     affiliations:
       - elixir-europe
 
+MariaTsayo:
+    name: Maria Tsagiopoulou
+    joined: 2024-05
+    affiliations:
+     - inab-certh
+
 mariipia10:
     name: Maria Pia
     joined: 2021-10
@@ -1779,6 +1818,12 @@ proccaserra:
     affiliations:
       - elixir-europe
 
+prodromus:
+    name: Jonathan Trow
+    joined: 2024-05
+    affiliations:
+      - ncbi
+
 ptsefton:
     name: Peter Sefton
     orcid: 0000-0002-3545-944X
@@ -1854,6 +1899,16 @@ rlibouba:
       - eurosciencegateway
       - elixir-europe
 
+rwinand:
+    name: Raf Winand
+    joined: 2024-05
+    affiliations:
+      - sciensano
+
+s3by01:
+    name: Sébastien Fouilloux
+    joined: 2024-05
+
 samanthaanjei:
     name: Samantha Anjei
     joined: 2022-04
@@ -2286,6 +2341,13 @@ yvanlebras:
       - fnso2019
       - elixir-europe
 
+yvesvdb:
+    name: Yves Vandenbrouck
+    joined: 2024-05
+    affiliations:
+      - ifb
+
+
 SNG888:
     name: Sandra Ng
     email: [email protected]

diff --git a/ORGANISATIONS.yaml b/ORGANISATIONS.yaml
@@ -88,6 +88,11 @@ ifb:
     avatar: "/training-material/shared/images/ifb.png"
     github: false
 
+inab-certh:
+    name: INAB|CERTH
+    url: "https://www.inab.certh.gr/"
+    avatar: "/training-material/shared/images/inab-certh.png"
+
 irccs:
     name: IRCCS Ospedale San Raffaele
     url: "https://www.hsr.it/"
@@ -100,19 +105,36 @@ jetstream2:
     avatar: https://jetstream-cloud.org/images/home/jetstream-2.png
     github: false
 
+johnshopkins:
+    name: Johns Hopkins University
+    url: "https://www.jhu.edu/"
+    avatar: "/training-material/shared/images/hopkins.png"
+    github: false
+
 linq:
   name: LINQ
   description: LINQ management GmbH
   link: "https://linq-management.com/"
   avatar: "/training-material/shared/images/linq.jpg"
   github: false
 
+minnesotauni:
+    name:  University of Minnesota
+    url:  "https://twin-cities.umn.edu/"
+    avatar: "/training-material/shared/images/minnesotauni.png"
+    github: false
+
 MPIIE:
     name: Max Planck Institute of Immunology and Epigenetics
     url: https://www.ie-freiburg.mpg.de
     avatar: https://raw.githubusercontent.com/bgruening/presentations/master/shared/resources/img/14_MPI_IE_logo_mit_180.gif
     github: false
 
+ncbi:
+    name: National Center for Biotechnology Information
+    url: "https://www.ncbi.nlm.nih.gov/"
+    avatar: "/training-material/shared/images/ncbi.png"
+
 panacea:
     name: PanACEA
     description: Pan-African Consortium for the Evaluation of Antituberculosis Antibiotics
@@ -127,6 +149,11 @@ pangens:
     avatar: "/training-material/shared/images/pangens.jpg"
     github: false
 
+petermac:
+    name: Peter MacCallum Cancer Centre
+    url: "https://www.petermac.org/"
+    avatar: "/training-material/shared/images/petermac.png"
+
 pndb:
     name: Pôle National de Données de Biodiversité
     url: https://www.pndb.fr/
@@ -157,18 +184,24 @@ san-raffaele-uni:
     avatar: "/training-material/shared/images/uni_san_raffaele.svg"
     github: false
 
-tb-capt:
-    name: TB-CAPT
-    url: https://www.tb-capt.org/
-    avatar: "/training-material/shared/images/tb_capt.svg"
-    github: false
+sciensano:
+  name: Sciensano
+  url: "https://www.sciensano.be"
+  avatar: "/training-material/shared/images/sciensano.jpg"
+  github: false
 
 swiss-tph:
     name: Swiss Tropical and Public Health Institute
     url: https://www.swisstph.ch/en/
     avatar: "/training-material/shared/images/swiss-tph.png"
     github: false
 
+tb-capt:
+    name: TB-CAPT
+    url: https://www.tb-capt.org/
+    avatar: "/training-material/shared/images/tb_capt.svg"
+    github: false
+
 uga:
     name: Université Grenoble-Alpes
     url: https://www.univ-grenoble-alpes.fr/
@@ -194,4 +227,3 @@ vib:
     github: false
 
 
-
diff --git a/_includes/contributor-human-icons.html b/_includes/contributor-human-icons.html
@@ -13,7 +13,15 @@
 {% elsif include.activity == "funding" %}
 	<abbr title="These individuals or organisations provided funding support for the development of this resource">💵</abbr>
 {% elsif include.activity == "maintainer" %}
-	<abbr title="These individuals or organisations are responsible for maintaining this resource">🧑‍🏫</abbr>
+	<abbr title="These individuals or organisations are responsible for maintaining this resource">⚒</abbr>
+{% elsif include.activity == "captioner" %}
+	<abbr title="These individuals or organisations are responsible for hand curating the captions of a video">💬</abbr>
+{% elsif include.activity == "speaker" %}
+	<abbr title="These individuals produced a video recording of a training material">🗣</abbr>
+{% elsif include.activity == "organisers" %}
+	<abbr title="These individuals or organisations were responsible for organising an event">🎪</abbr>
+{% elsif include.activity == "instructors" %}
+	<abbr title="These individuals taught at an event">🧑‍🏫</abbr>
 {% else %}
 	{{ include.activity }}
 {% endif %}