Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix fasttree tool #6640

Merged
merged 1 commit into from
Dec 16, 2024
Merged

Fix fasttree tool #6640

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 0 additions & 2 deletions tools/fasttree/.lint_skip
View file
Open in desktop

This file was deleted.

9 changes: 8 additions & 1 deletion tools/fasttree/fasttree.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,7 @@ $model_selector.model
</conditional>
</when>
</conditional>
<param name="save_logfile" type="boolean" truevalue="" falsevalue="" checked="false" label="Save log file output" />
<param name="save_logfile" type="boolean" checked="false" label="Save log file output" />
<conditional name="model_selector">
<param name="format" type="select" label="Protein or nucleotide alignment" help="Specify if the aligned sequences are nucleotide or protein sequences">
<option value="-nt">Nucleotide</option>
Expand Down Expand Up @@ -154,6 +154,13 @@ $model_selector.model
<output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" />
<output name="log" file="log.txt" ftype="txt" compare="contains" />
</test>
<test expect_num_outputs="1">
<param name="select_format" value="fasta" />
<param name="model" value="" />
<param name="input" value="aligned.fasta" />
<param name="format" value="-nt" />
<output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" />
</test>
</tests>
<help>
<![CDATA[
Expand Down
Loading