[tool update] Trimal

[shiltemann]

Update wrapper for Trimal, a tool for trimming multiple alignment files.

Added some more parameters and small tweaks

Part of a larger effort to create a gene family tree pipeline

FOR CONTRIBUTOR:

• I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• License permits unrestricted use (educational + commercial)
• This PR adds a new tool or tool collection
• This PR updates an existing tool or tool collection
• This PR does something else (explain below)

[shiltemann]

oh! guess I just missed #6397 by @B0r1sD

[bgruening]

Upps, sorry. its available here: https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/trimal/trimal/1.5+galaxy0

[shiltemann]

cool, I will rebase and see if there is anything I have in my version that can enhance the current wrapper or not

[shiltemann]

Thanks for the fixes @bgruening!

[B0r1sD]

Seems like enhancements were definitely made, thanks @shiltemann!
Ping @nicodr97 and @pauldg for visibility.

[nicodr97]

Wonderful! Would it make sense to remove the html output by default? Or at least the possibility for the user not to generate it? Thank you for the contributions :)

[shiltemann]

@nicodr97 sure, we can make that choice for users if you think that is useful 👍