Code

Update Anndata to 0.10.9#6309

Code

Merged

bgruening merged 17 commits intogalaxyproject:maingalaxyproject/tools-iuc:mainfrom pavanvidem:anndata-0.10.9pavanvidem/tools-iuc:anndata-0.10.9Copy head branch name to clipboardSep 14, 2024

+597-308

Commits

Commits on Sep 6, 2024

• Update Anndata to 0.10.9

  pavanvidem

  committed
  fc03c16

Commits on Sep 9, 2024

• replace h5ad size comparison with h5 asserts

  pavanvidem

  committed
  4de98de

• fix linting and remove h5ad test data

  pavanvidem

  committed
  e0a651c

Commits on Sep 10, 2024

• add tests for newly added functions

  pavanvidem

  committed
  0bf651c

• add gzip compression for all h5ad files

  pavanvidem

  committed
  9a531cc

Commits on Sep 11, 2024

• add help text about newly added functions and update tests

  pavanvidem

  committed
  0343a4c

• fix tests

  pavanvidem

  committed
  bd992d4

• remove flagged.h5ad

  pavanvidem

  committed
  fe812e7

• move all loompy functions to modify_loom

  pavanvidem

  committed
  011951c

Commits on Sep 12, 2024

• trying to fix tests

  pavanvidem

  committed
  53470b2

• fix anndata to loom

  pavanvidem

  committed
  48b01d4

• fix

  pavanvidem

  committed
  30a636f

Commits on Sep 13, 2024

• move all loom functions to modify_loom.xml and fix tests

  pavanvidem

  committed
  959a8d1

Commits on Sep 14, 2024

• change output loom name to fix the test

  pavanvidem

  committed
  4196c66

• re-add all the tests to modify_loom

  pavanvidem

  committed
  320fb61

• review suggestions

  pavanvidem

  committed
  0b4f26b

• fix the order of elements in collection

  pavanvidem

  committed
  953f226