Skip to content

Commit

Permalink
add more info on ncbi annotation of input trees
Browse files Browse the repository at this point in the history
  • Loading branch information
shiltemann committed Dec 6, 2024
1 parent 3ab0ad9 commit f6b3abf
Showing 1 changed file with 7 additions and 1 deletion.
8 changes: 7 additions & 1 deletion tools/ete-toolkit/ete-treeviewer.xml
Original file line number Diff line number Diff line change
Expand Up @@ -94,7 +94,7 @@ curl http://etetoolkit.org/get_svg/
<test expect_num_outputs="1"><!-- test 5: png output -->
<param name="input_tree" value="quicktree_alignment_VARL.tre" ftype="newick"/>
<param name="output_format" value="png" />
<output name="output_tree_image" file="minimal-tree-out.png" ftype="png"/>
<output name="output_tree_image" file="minimal-tree-out.png" ftype="png" compare="sim_size"/>
</test>
</tests>
<help><![CDATA[
Expand All @@ -111,6 +111,12 @@ Input trees should be in Newick format. Optionally a fasta alignment may also be
Tip: Use NCBI numeric taxids as leaf names (or in the format TaxID.sequenceName) to get on-the-fly translation of species names and lineages.
For example::
((6669.DappuP312785:1.24473,(((7739.JGI126010:4.02e-06,7739.JGI126021:0.168081)0.99985:0.848895, [..]
where 66969 and 7739 are NCBI TaXIDs.
**Output**
The tool will output a tree image in SVG or PNG format.
Expand Down

0 comments on commit f6b3abf

Please sign in to comment.