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fastqc: set tmpdir (#6207)
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* fastqc: set tmpdir

xref galaxyproject/galaxy#18628

* Update tools/fastqc/rgFastQC.xml

Co-authored-by: Marius van den Beek <[email protected]>

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Co-authored-by: Marius van den Beek <[email protected]>
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bernt-matthias and mvdbeek authored Aug 6, 2024
1 parent d8a42fc commit cd51396
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion tools/fastqc/rgFastQC.xml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<tool id="fastqc" name="FastQC" version="0.74+galaxy0">
<tool id="fastqc" name="FastQC" version="0.74+galaxy1" profile="23.0">
<description>Read Quality reports</description>
<xrefs>
<xref type="bio.tools">fastqc</xref>
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--limits '${limits}'
#end if
--threads \${GALAXY_SLOTS:-2}
--dir \${TEMP:-\$_GALAXY_JOB_TMP_DIR}
--quiet
--extract
#if $min_length:
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