Fix fasttree tool (#6640)

galaxyproject · Dec 16, 2024 · a90964e · a90964e
1 parent 69d5428
commit a90964e
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 3 deletions.
diff --git a/tools/fasttree/.lint_skip b/tools/fasttree/.lint_skip
diff --git a/tools/fasttree/fasttree.xml b/tools/fasttree/fasttree.xml
@@ -90,7 +90,7 @@ $model_selector.model
                 </conditional>
             </when>
         </conditional>
-        <param name="save_logfile" type="boolean" truevalue="" falsevalue="" checked="false" label="Save log file output" />
+        <param name="save_logfile" type="boolean" checked="false" label="Save log file output" />
         <conditional name="model_selector">
             <param name="format" type="select" label="Protein or nucleotide alignment" help="Specify if the aligned sequences are nucleotide or protein sequences">
                 <option value="-nt">Nucleotide</option>
@@ -154,6 +154,13 @@ $model_selector.model
             <output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" />
             <output name="log" file="log.txt" ftype="txt" compare="contains" />
         </test>
+        <test expect_num_outputs="1">
+            <param name="select_format" value="fasta" />
+            <param name="model" value="" />
+            <param name="input" value="aligned.fasta" />
+            <param name="format" value="-nt" />
+            <output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" />
+        </test>
     </tests>
     <help>
 <![CDATA[