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Merge pull request #5515 from JasperO98/patch-2
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Fix urls in help
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bgruening authored Oct 3, 2023
2 parents 0f83e13 + 85b3989 commit 9b23599
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions tools/pyega3/pyega3.xml
Original file line number Diff line number Diff line change
Expand Up @@ -237,8 +237,8 @@ The pyEGA3 download client is a python-based tool for viewing and downloading fi
.. class:: Warning mark
Data is stored unencrypted on the user's Galaxy account. Confidential data from the EGA could be left unprotected when uploaded to a public Galaxy server.
Make sure to read the EGA Data Access Agreement ([DAA](https://ega-archive.org/files/Example_DAA.doc)) before uploading any data to Galaxy from the EGA.
If this applies to you, we recommend you follow [this link](https://github.com/elixir-europe/GalaxySensitiveData-ELIXIR_IS) for updates on encrypted data at rest.
Make sure to read the EGA Data Access Agreement (DAA_) before uploading any data to Galaxy from the EGA.
If this applies to you, we recommend you follow the GalaxySensitiveData-ELIXIR-IS_ page for updates on encrypted data at rest.
If you have an EGA account, you can set your EGA credentials in the user preferences menu of Galaxy. Otherwise, default EGA credentials with access to an example dataset will be used.
Expand All @@ -250,6 +250,8 @@ pyEGA3 uses the EGA Data API and has several key features:
- After download completes, file integrity is verified using checksums.
- pyEGA3 implements the GA4GH-compliant htsget protocol for download of genomic ranges for data files with accompanying index files.
.. _DAA: https://ega-archive.org/files/Example_DAA.doc
.. _GalaxySensitiveData-ELIXIR-IS: https://github.com/elixir-europe/GalaxySensitiveData-ELIXIR_IS
]]></help>
<citations>
<citation type="doi">10.1038/ng.3312</citation>
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