Add biotools for CONCOCT (#5573)

galaxyproject · Nov 12, 2023 · 86e1afe · 86e1afe
1 parent 339c914
commit 86e1afe
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diff --git a/tools/concoct/concoct.xml b/tools/concoct/concoct.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 ## CONCOCT doesn't handle gzipped files.

diff --git a/tools/concoct/concoct_coverage_table.xml b/tools/concoct/concoct_coverage_table.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 #import re

diff --git a/tools/concoct/cut_up_fasta.xml b/tools/concoct/cut_up_fasta.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 ## CONCOCT doesn't handle gzipped files.

diff --git a/tools/concoct/extract_fasta_bins.xml b/tools/concoct/extract_fasta_bins.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 ## CONCOCT doesn't handle gzipped files.

diff --git a/tools/concoct/macros.xml b/tools/concoct/macros.xml
@@ -2,6 +2,11 @@
     <token name="@TOOL_VERSION@">1.1.0</token>
     <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">21.01</token>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">concoct</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">concoct</requirement>

diff --git a/tools/concoct/merge_cut_up_clustering.xml b/tools/concoct/merge_cut_up_clustering.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 merge_cutup_clustering.py