fix for 6204 (#6216)

galaxyproject · Aug 11, 2024 · 5b9441b · 5b9441b
1 parent 671a5fc
commit 5b9441b
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/tools/bcftools/bcftools_mpileup.xml b/tools/bcftools/bcftools_mpileup.xml
@@ -1,5 +1,4 @@
-<?xml version='1.0' encoding='utf-8'?>
-<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy4" profile="@PROFILE@">
     <description>Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files</description>
     <macros>
         <token name="@EXECUTABLE@">mpileup</token>
@@ -93,7 +92,7 @@ bcftools @EXECUTABLE@
     -F "${section.perform_indel_calling.minimum_gapped_read_fraction}"
     ${section.perform_indel_calling.gapped_read_per_sample}
     #if len( $section.perform_indel_calling.platform_list_repeat ):
-        -P "${ ",".join( [ str( platform.platform_entry ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }"
+        -P "${ ",".join( [ str( platform['platform_entry'] ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }"
     #end if
 #end if