Fix _ Upgrade rna quast (#6288)

* bump rnaQUAST version * fix STAR command check
galaxyproject · Aug 30, 2024 · 140ef12 · 140ef12
1 parent d68ebc9
commit 140ef12
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/tools/rnaquast/macros.xml b/tools/rnaquast/macros.xml
@@ -11,7 +11,7 @@
             <xref type="bio.tools">rnaQUAST</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.3</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">2.3.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">20.05</token>
  </macros>
diff --git a/tools/rnaquast/rna_quast.xml b/tools/rnaquast/rna_quast.xml
@@ -415,7 +415,7 @@
             <output_collection name="list_logs" type="list" count="14">
                 <element name="STAR.out" ftype="txt">
                     <assert_contents>
-                        <has_text text="STAR --runThreadN"/>
+                        <has_text_matching expression="STAR.* --runThreadN"/>
                         <has_text text="finished successfully"/>
                     </assert_contents>
                 </element>
@@ -464,7 +464,7 @@
             <output_collection name="list_logs" type="list" count="14">
                 <element name="STAR.out" ftype="txt">
                     <assert_contents>
-                        <has_text text="STAR --runThreadN"/>
+                        <has_text_matching expression="STAR.* --runThreadN"/>
                         <has_text text="finished successfully"/>
                     </assert_contents>
                 </element>