add citations

galaxyproject · Mar 6, 2024 · 0449e4b · 0449e4b
1 parent 87ea68e
commit 0449e4b
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/tools/rseqc/read_duplication.xml b/tools/rseqc/read_duplication.xml
@@ -7,27 +7,23 @@
     <expand macro="requirements" />
     <expand macro="stdio" />
     <version_command><![CDATA[read_duplication.py --version]]></version_command>
-
     <command><![CDATA[
         @BAM_SAM_INPUTS@
         read_duplication.py -i 'input.${extension}' -o output -u ${upLimit} -q ${mapq}
         ]]>
     </command>
-
     <inputs>
         <expand macro="bam_sam_param" />
         <param name="upLimit" type="integer" label="Upper Limit of Plotted Duplicated Times (default=500)" value="500" help="(--up-limit)"/>
         <expand macro="mapq_param" />
         <expand macro="rscript_output_param" />
     </inputs>
-
     <outputs>
         <expand macro="pdf_output_data" filename="output.DupRate_plot.pdf"  label="${tool.name} on ${on_string}: plot (PDF)"/>
         <data format="tabular" name="outputxls" from_work_dir="output.pos.DupRate.xls" label="${tool.name} on ${on_string}: positon"/>
         <data format="tabular" name="outputseqxls" from_work_dir="output.seq.DupRate.xls" label="${tool.name} on ${on_string}: sequences"/>
         <expand macro="rscript_output_data" filename="output.DupRate_plot.r" label="${tool.name} on ${on_string}: Rscript"/>
     </outputs>
-
     <tests>
         <test expect_num_outputs="4">
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
@@ -73,6 +69,7 @@ Output
 @ABOUT@
 
 ]]>
+    <expand macro="citations" />
     </help>
 
     <expand macro="citations" />