Linter fixes for gatk4 #14912

Job	Run time
Setup cache and determine changed repositories (3.11)	1m 43s
Setup cache and determine changed repositories (3.11)	1m 43s
Setup cache and determine changed repositories (3.11)	1m 43s
Lint tool-list (3.11)	51s
Lint tool-list (3.11)	52s
Lint tool-list (3.11)	55s
Lint R scripts (ubuntu-20.04, release)	1m 33s
Lint R scripts (ubuntu-20.04, release)	1m 33s
Lint R scripts (ubuntu-20.04, release)	1m 33s
Lint Python scripts (3.11)	32s
Lint Python scripts (3.11)	32s
Lint Python scripts (3.11)	32s
Check file sizes	40s
Check file sizes	40s
Check file sizes	40s
Test tools (0, 3.11)	6m 55s
Test tools (0, 3.11)	6m 55s
Test tools (0, 3.11)	6m 55s
Combine chunked test results (3.11)	50s
Combine chunked test results (3.11)	50s
Combine chunked test results (3.11)	50s
Check workflow success	1s
Check workflow success	1s
Check workflow success	1s
Deploy	0s
Deploy	0s
Deploy	0s
Report deploy status	0s
Report deploy status	0s
Report deploy status	0s
	39m 20s

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