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Add annotation for vgp1 kmer profiling workflow #640

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merged 3 commits into from
Dec 17, 2024
Merged

Add annotation for vgp1 kmer profiling workflow #640

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86e1591
Add annotation for vgp1 kmer profiling workflow
dannon Dec 17, 2024
1114755
Update changelog and increment version to 0.1.9; add workflow annotation
dannon Dec 17, 2024
6acb4bd
Make test slightly more lentient
mvdbeek Dec 17, 2024
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3 changes: 3 additions & 0 deletions workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
# Changelog

## [0.1.9] 2024-12-17
### Added
- Annotation for workflow describing its function

## [0.1.8] 2024-12-03

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16 changes: 8 additions & 8 deletions workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml
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Expand Up @@ -29,16 +29,16 @@
delta: 10000
GenomeScope summary:
asserts:
has_text:
text: '27,842 bp'
has_text:
text: '35,913 bp'
- has_text_matching:
expression: '27,84. bp'
- has_text_matching:
expression: '35,91. bp'
GenomeScope Model Parameters:
asserts:
has_text:
text: '0.0918418396430493'
has_text:
text: '27.44263'
- has_text_matching:
expression: '0.09184.*'
- has_text_matching:
expression: '27.44.*'
Merged Meryl Database:
asserts:
has_size:
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4 changes: 2 additions & 2 deletions workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
{
"a_galaxy_workflow": "true",
"annotation": "",
"annotation": "Performs k-mer profiling on PacBio data and generates GenomeScope plots and summary for genome characteristics assessment.",
"comments": [],
"creator": [
{
Expand All @@ -15,7 +15,7 @@
],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.1.8",
"release": "0.1.9",
"name": "kmer-profiling-hifi-VGP1",
"report": {
"markdown": "\n# Workflow Execution Report\n\n\n```galaxy\ninvocation_time()\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope log plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed log plot\")\n```\n\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
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