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Add ecoregionalization workflow #588

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16 changes: 16 additions & 0 deletions workflows/ecology/ecoregionalization-workflow/.dockstore.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
version: 1.2
workflows:
- subclass: Galaxy
primaryDescriptorPath: /Ecoregionalization_workflow_Part_1.ga
testParameterFiles:
- /Ecoregionalization_workflow_Part_1-tests.yml
name: Ecoregionalization-workflow-part-1
authors:
- orcid: 0009-0009-5969-8478
- subclass: Galaxy
primaryDescriptorPath: /Ecoregionalization_workflow_Part_2.ga
testParameterFiles:
- /Ecoregionalization_workflow_Part_2-tests.yml
name: Ecoregionalization-workflow-part-2
authors:
- orcid: 0009-0009-5969-8478
5 changes: 5 additions & 0 deletions workflows/ecology/ecoregionalization-workflow/CHANGELOG.md
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@@ -0,0 +1,5 @@
# Changelog

## [0.1]

Initial version of the ecoregionalization workflow
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- doc: Test outline for Ecoregionalization-workflow-Part-1
job:
0030809-240506114902167.zip:
class: File
path: test-data/0030809-240506114902167.zip.zip
filetype: zip
ceamarc_env.tab:
class: File
path: test-data/ceamarc_env.tabular
filetype: tabular
pivot_wider_jupytool_notebook.ipynb:
class: File
path: test-data/pivot_wider_jupytool_notebook.ipynb
filetype: ipynb
outputs:
occ_out:
asserts:
has_size:
value: 48864
delta: 50
occ_env_out:
asserts:
has_size:
value: 56421
delta: 50
info_out:
asserts:
has_n_columns:
n: 3
coll_pred:
element_tests:
1_brts_pred_ceamarc:
asserts:
has_n_columns:
n: 4
coll_val:
element_tests:
1_brts_validation_ceamarc:
asserts:
has_n_columns:
n: 4
summary:
asserts:
has_n_columns:
n: 3
taxa:
asserts:
has_n_columns:
n: 1
taxa_clean:
asserts:
has_n_columns:
n: 1
SIH_index:
asserts:
has_text:
text: PNG
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