Merge pull request #598 from planemo-autoupdate/workflows/genome-asse…

…mbly/quality-and-contamination-control Updating workflows/genome-assembly/quality-and-contamination-control from 1.1.5 to 1.1.6
galaxyproject · Nov 22, 2024 · a150509 · a150509
2 parents 3b04202 + f09d921
commit a150509
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 7 deletions.
diff --git a/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md b/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [1.1.6] 2024-11-18
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3`
+
 ## [1.1.5] 2024-10-21
 
 ### Automatic update

diff --git a/...ws/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga b/...ws/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga
@@ -27,7 +27,7 @@
     ],
     "format-version": "0.1",
     "license": "GPL-3.0-or-later",
-    "release": "1.1.5",
+    "release": "1.1.6",
     "name": "Quality and Contamination Control For Genome Assembly",
     "steps": {
         "0": {
@@ -152,7 +152,7 @@
         },
         "4": {
             "annotation": "fastp_triming, quality analaysis and read cleaning",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3",
             "errors": null,
             "id": 4,
             "input_connections": {
@@ -180,11 +180,11 @@
             "outputs": [
                 {
                     "name": "out1",
-                    "type": "auto"
+                    "type": "input"
                 },
                 {
                     "name": "out2",
-                    "type": "auto"
+                    "type": "input"
                 },
                 {
                     "name": "report_html",
@@ -271,15 +271,15 @@
                     "output_name": "report_json"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3",
             "tool_shed_repository": {
-                "changeset_revision": "dbfc505896e9",
+                "changeset_revision": "a626e8c0e1ba",
                 "name": "fastp",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"filter_options\": {\"quality_filtering_options\": {\"disable_quality_filtering\": false, \"qualified_quality_phred\": null, \"unqualified_percent_limit\": null, \"n_base_limit\": null}, \"length_filtering_options\": {\"disable_length_filtering\": false, \"length_required\": null, \"length_limit\": null}, \"low_complexity_filter\": {\"enable_low_complexity_filter\": false, \"complexity_threshold\": null}}, \"output_options\": {\"report_html\": true, \"report_json\": true}, \"overrepresented_sequence_analysis\": {\"overrepresentation_analysis\": false, \"overrepresentation_sampling\": null}, \"read_mod_options\": {\"polyg_tail_trimming\": {\"trimming_select\": \"\", \"__current_case__\": 1, \"poly_g_min_len\": null}, \"polyx_tail_trimming\": {\"polyx_trimming_select\": \"\", \"__current_case__\": 1}, \"umi_processing\": {\"umi\": false, \"umi_loc\": null, \"umi_len\": null, \"umi_prefix\": null}, \"cutting_by_quality_options\": {\"cut_by_quality5\": false, \"cut_by_quality3\": false, \"cut_window_size\": null, \"cut_mean_quality\": null}, \"base_correction_options\": {\"correction\": false}}, \"single_paired\": {\"single_paired_selector\": \"paired\", \"__current_case__\": 1, \"in1\": {\"__class__\": \"ConnectedValue\"}, \"in2\": {\"__class__\": \"ConnectedValue\"}, \"merge_reads\": {\"merge\": \"\", \"__current_case__\": 1}, \"adapter_trimming_options\": {\"disable_adapter_trimming\": false, \"adapter_sequence1\": null, \"adapter_sequence2\": null, \"detect_adapter_for_pe\": false}, \"global_trimming_options\": {\"trim_front1\": null, \"trim_tail1\": null, \"trim_front2\": null, \"trim_tail2\": null}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "0.23.4+galaxy2",
+            "tool_version": "0.24.0+galaxy3",
             "type": "tool",
             "uuid": "7f405009-2491-4633-b4e1-ca0fdbd8360d",
             "when": null,