Merge pull request #232 from planemo-autoupdate/workflows/epigenetics…

…/atacseq Updating workflows/epigenetics/atacseq from 0.6 to 0.7
galaxyproject · Oct 17, 2023 · 4d2d478 · 4d2d478
2 parents a08dce4 + 26c3f53
commit 4d2d478
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diff --git a/workflows/epigenetics/atacseq/CHANGELOG.md b/workflows/epigenetics/atacseq/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.7] 2023-10-17
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.9.1+galaxy0`
+
 ## [0.6] 2023-09-27
 
 ### Automatic update

diff --git a/workflows/epigenetics/atacseq/atacseq.ga b/workflows/epigenetics/atacseq/atacseq.ga
@@ -10,7 +10,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.6",
+    "release": "0.7",
     "name": "ATACseq",
     "steps": {
         "0": {
@@ -636,7 +636,7 @@
         },
         "13": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.9.1+galaxy0",
             "errors": null,
             "id": 13,
             "input_connections": {
@@ -744,15 +744,15 @@
                     "output_name": "output_treat_pileup"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.9.1+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "640d3af5d833",
+                "changeset_revision": "86e2413cf3f8",
                 "name": "macs2",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"advanced_options\": {\"to_large\": false, \"nolambda\": false, \"spmr\": false, \"ratio\": null, \"slocal\": null, \"llocal\": null, \"broad_options\": {\"broad_options_selector\": \"nobroad\", \"__current_case__\": 1, \"call_summits\": true}, \"keep_dup_options\": {\"keep_dup_options_selector\": \"all\", \"__current_case__\": 2}, \"d_min\": \"20\", \"buffer_size\": \"100000\"}, \"control\": {\"c_select\": \"No\", \"__current_case__\": 1}, \"cutoff_options\": {\"cutoff_options_selector\": \"qvalue\", \"__current_case__\": 1, \"qvalue\": \"0.05\"}, \"effective_genome_size_options\": {\"effective_genome_size_options_selector\": \"user_defined\", \"__current_case__\": 4, \"gsize\": {\"__class__\": \"ConnectedValue\"}}, \"format\": \"BED\", \"nomodel_type\": {\"nomodel_type_selector\": \"nomodel\", \"__current_case__\": 1, \"extsize\": \"200\", \"shift\": \"-100\"}, \"outputs\": [\"peaks_tabular\", \"summits\", \"bdg\", \"html\"], \"treatment\": {\"t_multi_select\": \"No\", \"__current_case__\": 0, \"input_treatment_file\": {\"__class__\": \"ConnectedValue\"}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "2.2.7.1+galaxy0",
+            "tool_version": "2.2.9.1+galaxy0",
             "type": "tool",
             "uuid": "57386f5d-96bb-4684-97dc-3b2228189c01",
             "when": null,
@@ -1085,7 +1085,7 @@
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.30.0",
             "tool_shed_repository": {
-                "changeset_revision": "a68aa6c1204a",
+                "changeset_revision": "a1a923cd89e8",
                 "name": "bedtools",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"