Merge pull request #640 from dannon/add-annotation-vgp1-kmer-profiling

Add annotation for vgp1 kmer profiling workflow
galaxyproject · Dec 17, 2024 · 3e0a792 · 3e0a792
2 parents f5d1685 + 6acb4bd
commit 3e0a792
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Showing 3 changed files with 13 additions and 10 deletions.
diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md
@@ -1,5 +1,8 @@
 # Changelog
 
+## [0.1.9] 2024-12-17
+### Added
+- Annotation for workflow describing its function
 
 ## [0.1.8] 2024-12-03
 

diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml
@@ -29,16 +29,16 @@
       delta: 10000
     GenomeScope summary:
       asserts:
-        has_text:
-            text: '27,842 bp'
-        has_text:
-            text: '35,913 bp'
+        - has_text_matching:
+            expression: '27,84. bp'
+        - has_text_matching:
+            expression: '35,91. bp'
     GenomeScope Model Parameters:
       asserts:
-        has_text:
-            text: '0.0918418396430493'
-        has_text:
-            text: '27.44263'
+        - has_text_matching:
+            expression: '0.09184.*'
+        - has_text_matching:
+            expression: '27.44.*'
     Merged Meryl Database:
       asserts:
         has_size:

diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga
@@ -1,6 +1,6 @@
 {
     "a_galaxy_workflow": "true",
-    "annotation": "",
+    "annotation": "Performs k-mer profiling on PacBio data and generates GenomeScope plots and summary for genome characteristics assessment.",
     "comments": [],
     "creator": [
         {
@@ -15,7 +15,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.1.8",
+    "release": "0.1.9",
     "name": "kmer-profiling-hifi-VGP1",
     "report": {
         "markdown": "\n# Workflow Execution Report\n\n\n```galaxy\ninvocation_time()\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope log plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed log plot\")\n```\n\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"