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Extract wfs from dev.workflowhub and add manual curation steps #269

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merged 5 commits into from
Dec 22, 2024
Merged

Extract wfs from dev.workflowhub and add manual curation steps #269

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9109c44
Extrac wfs from dev.workflowhub
bebatut Dec 20, 2024
ea3e9c2
Add curation step
bebatut Dec 21, 2024
b642f9b
Add workflow_status file and curation step
bebatut Dec 22, 2024
fdc6ba7
Update workflow files
bebatut Dec 22, 2024
bdff789
Update workflow tests
bebatut Dec 22, 2024
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94,086 changes: 54,709 additions & 39,377 deletions communities/all/resources/workflows.json
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12 changes: 12 additions & 0 deletions communities/microgalaxy/metadata/test_workflow_status.tsv
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Link Name Source Projects Creators Creation time Update time To keep Deprecated
https://usegalaxy.eu/published/workflow?id=a2c46deea34d9d80 Halophiles workup of Comparative gene analysis https://usegalaxy.eu Anton Nekrutenko 2024-12-03 2024-12-05 True False
https://usegalaxy.eu/published/workflow?id=ca9d3233b0912765 pAllori Blood RNA https://usegalaxy.eu Engy Nasr, Paul Zierep 2023-07-02 2024-11-24 True False
https://usegalaxy.eu/published/workflow?id=cefc49c13ff73231 Metaproteomics workflow https://usegalaxy.eu Timothy Griffin, Pratik Jagtap, James Johnson, Clemens Blank, Subina Mehta 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=6239178d7cc4ac68 Feature-Count Table Normalization https://usegalaxy.eu Johannes Effenberger 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=cd675ab32d3e7833 metaQuantome_datacreation_workflow https://usegalaxy.eu Subina Metha, Timothy J. Griffin, Pratik Jagtap, Emma Leith, Marie Crane 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=e5a89ef7b5f1c1d9 metaquantome-function-worklow https://usegalaxy.eu Subina Mehta, Timothy J. Griffin, Pratik Jagtap, Emma Leith, Marie Crane, Praveen Kumar 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=466bdd8ba7b67264 pAllori Amplicon 16S Pre-Processing and Taxonomy Classification https://usegalaxy.eu Engy Nasr, Paul Zierep 2023-06-30 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=c09159d7aad0f264 Cloud Aerosol MT-MG Contamination Filtering https://usegalaxy.eu Engy Nasr , Bérénice Batut, Raphaëlle Péguilhan, Pierre Amato 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=fd90652d475ed739 Metatranscriptomics data analysis https://usegalaxy.eu Valerie C. Schiml, Magnus Ø. Arntzen, Francesco Delogu, Praveen Kumar, Benoit Kunath, Bérénice Batut, Subina Mehta, James E. Johnson, Björn Grüning, Phillip B. Pope, Pratik D. Jagtap, Timothy J. Griffin 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=63478edcea3f449a Cloud-Aerosole MT-MG Functional Profiling https://usegalaxy.eu Engy Nasr, Bérénice Batut, Raphaëlle Péguilhan, Pierre Amato 2024-11-21 2024-11-21 True False
https://usegalaxy.eu/published/workflow?id=1ef76b7b86e15792 Cloud-Aerosole MT-MG Pre-Processing https://usegalaxy.eu Engy Nasr, Bérénice Batut, Raphaëlle Péguilhan, Pierre Amato 2024-11-21 2024-11-21 True False
150 changes: 150 additions & 0 deletions communities/microgalaxy/metadata/workflow_status.tsv
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83 changes: 83 additions & 0 deletions communities/microgalaxy/resources/curated_workflows.tsv
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