Update labs microgalaxy to include trainigs and toturials #267
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Sorry this is really hacky, but the fastes I could get. Need to finish for this year :)
This PR adds trainings and workflows to isolate and microbiome sections of microGalaxy.
It does not look nice, since there are too many, but it works:
https://labs.usegalaxy.org.au/?content_root=https://raw.githubusercontent.com/paulzierep/galaxy_tool_extractor/refs/heads/update-labs-microgalaxy-manual/communities/microgalaxy/lab/usegalaxy.eu.yml&cache=false
We need to rethink how we want to structure it, since we cannot have subtabs for the tables, afaik.
We could group trainings by
Topic. But then I am not sure if subdividing by isolate / microbiome is needed.How to group workflows I am also not sure. Random EDAM operations ? Source ? . no idea tbh !
The provide script only produces snippets for one table entry, that need must be manually added to the full table.
use
bash sources/bin/populate_labs.shto create the snippetsHow to make that generic is also pretty difficult. We properly need to keep this a microGalaxy specific scipt for the moment.
This PR also updates the support table to look a bit nicer.
I am not sure if we should keep the workflows table, if we already cover that in the two other tables. Doublication confuses people.
Also I think we could add the help to the first table, since people need it and the extra table is properly also clutter.