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results/imaging/index.html

@@ -821,16 +821,16 @@
       <td></td>
       <td>superdsm</td>
       <td>0.1.3</td>
-      <td>0.1.3</td>
+      <td>0.2.0</td>
       <td>superdsm</td>
-      <td>Up-to-date</td>
+      <td>To update</td>
       <td>superdsm</td>
       <td>SuperDSM</td>
       <td>Image analysis</td>
       <td></td>
       <td>Globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images</td>
       <td>SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.</td>
-      <td>Up-to-date</td>
+      <td>To update</td>
       <td>https://github.com/bmcv</td>
       <td>Imaging</td>
       <td>superdsm</td>
@@ -940,7 +940,7 @@
     <tr>
       <td></td>
       <td>graphicsmagick</td>
-      <td>1.3.40</td>
+      <td>1.3.42</td>
       <td>1.3.26</td>
       <td>graphicsmagick</td>
       <td>To update</td>

results/imaging/tools.tsv

@@ -36,13 +36,13 @@ segmetrics	3.0	2.0	ip_segmetrics	Image segmentation and object detection perform
 slice_image	102.0		ip_slice_image	Slice image	galaxy_image_analysis	Galaxy Image Analysis	Developed within the Biomedical Computer Vision (BMCV) Group Heidelberg.	Image analysis	Imaging, Bioinformatics	To update	https://github.com/bmcv	Imaging	slice_image	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/slice_image/	0.3-2	scikit-image		(0/1)	(0/1)	(1/1)	False	
 split_labelmap	42.0		ip_split_labelmap	Split Labelmaps	galaxy_image_analysis	Galaxy Image Analysis	Developed within the Biomedical Computer Vision (BMCV) Group Heidelberg.	Image analysis	Imaging, Bioinformatics	To update	https://github.com/bmcv	Imaging	split_labelmap	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/	0.2-2	scikit-image		(0/1)	(0/1)	(1/1)	False	
 spot_detection_2d	16.0	3.0	ip_spot_detection_2d	Spot detection in 2D image sequence	galaxy_image_analysis	Galaxy Image Analysis	Developed within the Biomedical Computer Vision (BMCV) Group Heidelberg.	Image analysis	Imaging, Bioinformatics	To update	https://github.com/BMCV/galaxy-image-analysis	Imaging	spot_detection_2d	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/spot_detection_2d/	0.0.3-2	imageio		(0/1)	(0/1)	(1/1)	False	
-superdsm	16.0	2.0	ip_superdsm	Globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images	superdsm	SuperDSM	SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.	Image analysis		Up-to-date	https://github.com/bmcv	Imaging	superdsm	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/	0.1.3	superdsm	0.1.3	(0/1)	(0/1)	(1/1)	False	
+superdsm	16.0	2.0	ip_superdsm	Globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images	superdsm	SuperDSM	SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.	Image analysis		To update	https://github.com/bmcv	Imaging	superdsm	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/	0.1.3	superdsm	0.2.0	(0/1)	(0/1)	(1/1)	False	
 visceral-evaluatesegmentation			ip_visceral_evaluatesegmentation	Visceral Project - Evaluate Segmentation Tool						To update	https://github.com/bmcv	Imaging	visceral_evaluatesegmentation	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/visceral-evaluatesegmentation	0.5-2	visceral-evaluatesegmentation	2015.07.03	(0/1)	(0/1)	(1/1)	False	
 wsi_extract_top_view	38.0		ip_wsi_extract_top_view	WSI Extract Top View						To update	https://github.com/bmcv	Imaging	wsi_extract_top_view	imgteam	https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/wsi_extract_top_view/	0.2-2	scikit-image		(0/1)	(0/1)	(1/1)	False	
 cellprofiler			cp_cellprofiler, cp_color_to_gray, cp_convert_objects_to_image, cp_display_data_on_image, cp_enhance_or_suppress_features, cp_export_to_spreadsheet, cp_gray_to_color, cp_identify_primary_objects, cp_image_math, cp_mask_image, cp_measure_granularity, cp_measure_image_area_occupied, cp_measure_image_intensity, cp_measure_image_quality, cp_measure_object_intensity, cp_measure_object_size_shape, cp_measure_texture, cp_overlay_outlines, cp_relate_objects, cp_save_images, cp_common, cp_tile, cp_track_objects	cellProfiler wrapper	CellProfiler	CellProfiler	Tool for quantifying data from biological images, particularly in high-throughput experiments.	Quantification, Image analysis, Parsing	Imaging, Microarray experiment, Genotype and phenotype	To update		Imaging	cellprofiler	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools				(0/23)	(23/23)	(23/23)	False	
 cellprofiler_v4			cp_cellprofiler4	cellProfiler4 wrapper						To update		Imaging	cellprofiler4	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools	4.2.6			(0/1)	(0/1)	(1/1)	False	
 bia-ftplinks			bia_download	Tool to query ftp links for study from bioimage archive						To update		Imaging	bia_download	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools	0.1.0	wget		(0/1)	(0/1)	(1/1)	False	
-graphicsmagick			graphicsmagick_image_compare, graphicsmagick_image_convert, graphicsmagick_image_montage	Contains tools based on GraphicsMagick						To update	http://www.graphicsmagick.org	Imaging	graphicsmagick	bgruening	https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/	1.3.40	graphicsmagick	1.3.26	(1/3)	(0/3)	(3/3)	False	
+graphicsmagick			graphicsmagick_image_compare, graphicsmagick_image_convert, graphicsmagick_image_montage	Contains tools based on GraphicsMagick						To update	http://www.graphicsmagick.org	Imaging	graphicsmagick	bgruening	https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/	1.3.42	graphicsmagick	1.3.26	(1/3)	(0/3)	(3/3)	False	
 imagej2			imagej2_adjust_threshold_binary, imagej2_analyze_particles_binary, imagej2_analyze_skeleton, imagej2_binary_to_edm, imagej2_bunwarpj_adapt_transform, imagej2_bunwarpj_align, imagej2_bunwarpj_compare_elastic, imagej2_bunwarpj_compare_elastic_raw, imagej2_bunwarpj_compare_raw, imagej2_bunwarpj_compose_elastic, imagej2_bunwarpj_compose_raw, imagej2_bunwarpj_compose_raw_elastic, imagej2_bunwarpj_convert_to_raw, imagej2_bunwarpj_elastic_transform, imagej2_bunwarpj_raw_transform, imagej2_create_image, imagej2_enhance_contrast, imagej2_find_edges, imagej2_find_maxima, imagej2_make_binary, imagej2_math, imagej2_noise, imagej2_shadows, imagej2_sharpen, imagej2_skeletonize3d, imagej2_smooth, imagej2_watershed_binary	ImageJ2 is a new version of ImageJ for the next generation of multidimensionalimage data, with a focus on scientific imaging.	imagej	ImageJ2	It is a public domain Java image processing program, which was designed with an open architecture. Custom acquisition, analysis and processing plugins can be developed using ImageJ’s built-in editor and a Java compiler. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging, to radiological image processing, multiple imaging system data comparisons to automated hematology systems.	Image analysis, Image annotation, Visualisation	Imaging	To update	http://fiji.sc	Imaging	imagej2	imgteam	https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2				(0/27)	(0/27)	(27/27)	False	
 spyboat	67.0	1.0	spyboat	Wavelet analysis for 3d-image stacks						To update	http://github.com/tensionhead/spyboat	Imaging, Graphics	spyboat	iuc	https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat	0.1.2	spyboat		(0/1)	(0/1)	(1/1)	False	
 qupath_roi_splitter	59.0	5.0	qupath_roi_splitter	Split ROI coordinates of QuPath TMA annotation by cell type						To update	https://github.com/npinter/ROIsplitter	Imaging	qupath_roi_splitter	galaxyp	hhttps://github.com/npinter/ROIsplitter	0.1.0+galaxy1	geojson		(0/1)	(0/1)	(1/1)	False