add beacon credentials to galaxy

[khaled196]

I am aiming to add Beacon credentials to Galaxy to wrap my tools into tools IUC

The Galaxy expects to keep the credentials to the Galaxu UI like this.

For the tools you can find them in

galaxyproject/tools-iuc#6028

`<xml name="configfile">
        <configfiles>
            <configfile name="credentials"><![CDATA[
            #set $db_auth_source = $__user__.extra_preferences.get('beacon2_account|db_auth_source', "")
            #set $db_user = $__user__.extra_preferences.get('beacon2_account|db_user', "")
            #set $db_password = $__user__.extra_preferences.get('beacon2_account|db_password', "")
            #if $db_user == "" or $db_password == "" or $db_auth_source == "":
                #set $db_auth_source = "admin"
                #set $db_user = "root"
                #set $db_password = "example"
            #end if
            {
                "db_auth_source": "$db_auth_source",
                "db_user": "$db_user",
                "db_password": "$db_password"
            }
            ]]></configfile>
    </configfiles>`

how the are extracted from the tool will be like this

--db-auth-source `jq -r .db_auth_source '$credentials'` 
--db-user `jq -r .db_user '$credentials'`
--db-password `jq -r .db_password '$credentials'`

How to test the changes?

(Select all options that apply)

• I've included appropriate automated tests.
• This is a refactoring of components with existing test coverage.
• Instructions for manual testing are as follows:
  1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

License

• I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

[khaled196]

I need some help in building this into the UI.

Thank you

[bgruening]

@khaled196 this is something an Admin needs to configure at the moment. We don't want to ship this with the Galaxy code base I think. Please ping me on Slack and we can discuss this.