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pcm32 committed Mar 28, 2023
1 parent 0b20473 commit 1741fa4
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions tools/interactive/interactivetool_cellxgene_1.1.1.xml
Original file line number Diff line number Diff line change
Expand Up @@ -17,21 +17,21 @@
<command><![CDATA[
#import re
#set $fancy_name = '/tmp/galaxy_cellxgene_' + re.sub('[^\w\-_]', '_', $infile.element_identifier) + '.h5ad'
#if ($var_name and $make_unique) or $layer:
python '${anndata_unique_var_gene_symbols}' '${infile}' '${fancy_name}' '${var_name}' '${make_unique}' '${layer}'
#else
cp '${infile}' '${fancy_name}'
#end if
&&
mkdir annotation_files
&&
&&
mkdir annotation_files
&&
cellxgene launch --host 0.0.0.0 --port 80
--user-generated-data-dir annotation_files
#if $var_name and not $make_unique:
--var-names $var_name
#end if
'${fancy_name}'
'${fancy_name}'
]]>
</command>
<configfiles>
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