Collect setting in posix file source plugin

galaxyproject · Nov 9, 2024 · 1628a75 · 1628a75
1 parent d28e4f9
commit 1628a75
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/lib/galaxy/files/sources/posix.py b/lib/galaxy/files/sources/posix.py
@@ -50,6 +50,7 @@ def __init__(self, **kwd: Unpack[PosixFilesSourceProperties]):
         self.root = props.get("root")
         if not self.root:
             self.writable = False
+        self.link_only = props.get("link_only", False)
         self.enforce_symlink_security = props.get("enforce_symlink_security", DEFAULT_ENFORCE_SYMLINK_SECURITY)
         self.delete_on_realize = props.get("delete_on_realize", DEFAULT_DELETE_ON_REALIZE)
         self.allow_subdir_creation = props.get("allow_subdir_creation", DEFAULT_ALLOW_SUBDIR_CREATION)
@@ -102,8 +103,9 @@ def _realize_to(
         else:
             source_native_path = os.path.normpath(source_native_path)
             assert source_native_path.startswith(os.path.normpath(effective_root))
-
-        if not self.delete_on_realize:
+        if self.link_only:
+            os.symlink(source_native_path, native_path)
+        elif not self.delete_on_realize:
             shutil.copyfile(source_native_path, native_path)
         else:
             shutil.move(source_native_path, native_path)