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Fix links to tag views in publication library
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Also fixes typos and outdated information on contributing to the
publication library.
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wm75 committed Oct 12, 2023
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15 changes: 8 additions & 7 deletions content/publication-library/contribute/index.md
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Expand Up @@ -3,13 +3,15 @@ title: "Contribute to the Galaxy Publication Library"
---

<div class="float-right">
[<img src="/images/logos/zotero-logo-small-trans.png" alt="Galaxy Publication Library at Zotero" />](https://www.zotero.org/groups/galaxy)

[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/1732893/galaxy)

</div>

It takes a fair amount of work to keep track of publications that reference
Galaxy in some way: There are now over 1000 papers per year that do so. The
bulk of this curation is currently done by [Galaxy
Team](/galaxy-team/) members using (quite possibly hundreds) of
Team](/galaxy-team/) members using (quite possibly hundreds of)
email alerts and custom software.

If you want to help curate papers then here's how you can help.
Expand All @@ -23,7 +25,7 @@ high-throughput supernova of a curator.*)
We use the [Zotero](https://zotero.org/) social bookmarking service to organize
publications that are about, use, or reference Galaxy. The [Galaxy Group on
Zotero](https://www.zotero.org/groups/galaxy) is open to any community member
who [would like to contribute](/publication-library/contribute/).
who would like to contribute.

# Set Up

Expand All @@ -47,7 +49,7 @@ for this work as we don't store PDFs in the Galaxy Group.

To add publications you'll need to [download and
install](https://www.zotero.org/download/) the Zotero Client. The client is
available for Mac, Linux, and Windows.
available for Mac, Linux, Windows, and iOS.

## Install the Zotero Connector in your web browser

Expand All @@ -59,9 +61,8 @@ automatically imports a wealth of metadata from most publishers.
default option.)

The [Zotero Connector](https://www.zotero.org/download/) is available for for
Chrome, Firefox, Safari, and Opera. A
[bookmarklet](https://www.zotero.org/downloadbookmarklet) is also available for
other browsers, tablets, and phones.
Chrome, Firefox, Safari, and Edge.
Options for users of other browsers are explained on the download page.

## Read this page carefully

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44 changes: 22 additions & 22 deletions content/publication-library/index.md
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Expand Up @@ -4,11 +4,11 @@ title: "Galaxy Publication Library"

<div class="float-right">

[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/galaxy)
[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/1732893/galaxy)

</div>

The Galaxy Project uses the [Zotero](https://zotero.org/) social bookmarking service to organize publications that reference Galaxy. The [Galaxy Group](https://www.zotero.org/groups/galaxy) lists published articles, conference proceedings, theses, book chapters and books that use, extend, reference or implement Galaxy. You can [search the library at Zotero](https://www.zotero.org/groups/1732893/galaxy/items), or through the [unified Galaxy search](/search/).
The Galaxy Project uses the [Zotero](https://zotero.org/) social bookmarking service to organize publications that reference Galaxy. The [Galaxy Group](https://www.zotero.org/groups/1732893/galaxy) lists published articles, conference proceedings, theses, book chapters and books that use, extend, reference or implement Galaxy. You can [search the library at Zotero](https://www.zotero.org/groups/1732893/galaxy/items), or through the [unified Galaxy search](/search/).

*(Need to cite Galaxy in a publication? See [Citing Galaxy](/citing-galaxy/).)*

Expand All @@ -24,26 +24,26 @@ Galaxy specific tags all start with "+":

| Tag | Explanation |
| --- | --- |
| **[+Galactic](https://www.zotero.org/groups/galaxy/items/tag/+Galactic/)** | Publication is about Galaxy. |
| **[+Stellar](https://www.zotero.org/groups/galaxy/items/tag/+Stellar/)** | Publication features Galaxy prominently. |
| [+Cloud](https://www.zotero.org/groups/galaxy/items/tag/+Cloud/) | Publications referencing / extending / discussing Galaxy in a cloud context. |
| [+Education](https://www.zotero.org/groups/galaxy/items/tag/+Education/) | Publications using / referencing / discussing Galaxy in an education/training context. |
| [+HowTo](https://www.zotero.org/groups/galaxy/items/tag/+HowTo) | Papers about how to use Galaxy for specific analyses. These are tutorials. |
| [+IsGalaxy](https://www.zotero.org/groups/galaxy/items/tag/+IsGalaxy/) | Publications about Galaxy itself or installations of Galaxy. |
| [+Methods](https://www.zotero.org/groups/galaxy/items/tag/+Methods/) | Uses Galaxy in their methods. If it's clear from the paper, which instance was used, then methods papers will also include one or more of these tags: |
| &nbsp; [+UseCloud](https://www.zotero.org/groups/galaxy/items/tag/+UseCloud/) | &nbsp; Uses a custom built cloud based instance of Galaxy in its methods. |
| &nbsp; [+UseLocal](https://www.zotero.org/groups/galaxy/items/tag/+UseLocal/) | &nbsp; Uses a local installation of Galaxy in its methods. |
| &nbsp; [+UseMain](https://www.zotero.org/groups/galaxy/items/tag/+UseMain/) | &nbsp; Uses the project's public server, [usegalaxy.org](https://usegalaxy.org/) (a.k.a. [Main](/main/), in its methods. |
| &nbsp; [+UsePublic](https://www.zotero.org/groups/galaxy/items/tag/+UsePublic/) | &nbsp; Uses a [publicly accessible Galaxy platform](/use/) in its methods. |
| [+Other](https://www.zotero.org/groups/galaxy/items/tag/+Other/) | Publications that don't fit well under any other tag. |
| [+Project](https://www.zotero.org/groups/galaxy/items/tag/+Project/) | Publications with a [Galaxy team](/galaxy-team/) member as an author. |
| [+RefPublic](https://www.zotero.org/groups/galaxy/items/tag/+RefPublic/) | References a [publicly accessible Galaxy instance](/use/) or a [Galaxy service](/use/). This is distinct from the *+UsePublic* tag. |
| [+Reproducibility](https://www.zotero.org/groups/galaxy/items/tag/+Reproducibility/) | Reproducibility and persistence in science. |
| [+Shared](https://www.zotero.org/groups/galaxy/items/tag/+Shared/) | Publications that have published workflows, histories, datasets, pages, or visualizations in a Galaxy instance. |
| [+Tools](https://www.zotero.org/groups/galaxy/items/tag/+Tools/) | Tools that run in, have been ported to, or interact with Galaxy |
| [+Unknown](https://www.zotero.org/groups/galaxy/items/tag/+Unknown/) | Publications that we know refer to Galaxy, but we aren't sure how because they are behind a paywall we don't have access to. These are revisited periodically. |
| [+Visualization](https://www.zotero.org/groups/galaxy/items/tag/+Visualization/) | Publications referencing Galaxy in a visualization and/or visual analytics context. |
| [+Workbench](https://www.zotero.org/groups/galaxy/items/tag/+Workbench/) | Publication mentions Galaxy as a platform. |
| **[+Galactic](https://www.zotero.org/groups/1732893/galaxy/tags/+Galactic/)** | Publication is about Galaxy. |
| **[+Stellar](https://www.zotero.org/groups/1732893/galaxy/tags/+Stellar/)** | Publication features Galaxy prominently. |
| [+Cloud](https://www.zotero.org/groups/1732893/galaxy/tags/+Cloud/) | Publications referencing / extending / discussing Galaxy in a cloud context. |
| [+Education](https://www.zotero.org/groups/1732893/galaxy/tags/+Education/) | Publications using / referencing / discussing Galaxy in an education/training context. |
| [+HowTo](https://www.zotero.org/groups/1732893/galaxy/tags/+HowTo) | Papers about how to use Galaxy for specific analyses. These are tutorials. |
| [+IsGalaxy](https://www.zotero.org/groups/1732893/galaxy/tags/+IsGalaxy/) | Publications about Galaxy itself or installations of Galaxy. |
| [+Methods](https://www.zotero.org/groups/1732893/galaxy/tags/+Methods/) | Uses Galaxy in their methods. If it's clear from the paper, which instance was used, then methods papers will also include one or more of these tags: |
| &nbsp; [+UseCloud](https://www.zotero.org/groups/1732893/galaxy/tags/+UseCloud/) | &nbsp; Uses a custom built cloud based instance of Galaxy in its methods. |
| &nbsp; [+UseLocal](https://www.zotero.org/groups/1732893/galaxy/tags/+UseLocal/) | &nbsp; Uses a local installation of Galaxy in its methods. |
| &nbsp; [+UseMain](https://www.zotero.org/groups/1732893/galaxy/tags/+UseMain/) | &nbsp; Uses the project's public server, [usegalaxy.org](https://usegalaxy.org/) (a.k.a. [Main](/main/)), in its methods. |
| &nbsp; [+UsePublic](https://www.zotero.org/groups/1732893/galaxy/tags/+UsePublic/) | &nbsp; Uses a [publicly accessible Galaxy platform](/use/) in its methods. |
| [+Other](https://www.zotero.org/groups/1732893/galaxy/tags/+Other/) | Publications that don't fit well under any other tag. |
| [+Project](https://www.zotero.org/groups/1732893/galaxy/tags/+Project/) | Publications with a [Galaxy team](/galaxy-team/) member as an author. |
| [+RefPublic](https://www.zotero.org/groups/1732893/galaxy/tags/+RefPublic/) | References a [publicly accessible Galaxy instance](/use/) or a [Galaxy service](/use/). This is distinct from the *+UsePublic* tag. |
| [+Reproducibility](https://www.zotero.org/groups/1732893/galaxy/tags/+Reproducibility/) | Reproducibility and persistence in science. |
| [+Shared](https://www.zotero.org/groups/1732893/galaxy/tags/+Shared/) | Publications that have published workflows, histories, datasets, pages, or visualizations in a Galaxy instance. |
| [+Tools](https://www.zotero.org/groups/1732893/galaxy/tags/+Tools/) | Tools that run in, have been ported to, or interact with Galaxy |
| [+Unknown](https://www.zotero.org/groups/1732893/galaxy/tags/+Unknown/) | Publications that we know refer to Galaxy, but we aren't sure how because they are behind a paywall we don't have access to. These are revisited periodically. |
| [+Visualization](https://www.zotero.org/groups/1732893/galaxy/tags/+Visualization/) | Publications referencing Galaxy in a visualization and/or visual analytics context. |
| [+Workbench](https://www.zotero.org/groups/1732893/galaxy/tags/+Workbench/) | Publication mentions Galaxy as a platform. |

### Public Platform tags (">")

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