feat: add strain to genomes list (#177)

galaxyproject · Dec 12, 2024 · 4f9dfd6 · 4f9dfd6
1 parent 1f4f3af
commit 4f9dfd6
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Showing 3 changed files with 29 additions and 1 deletion.
diff --git a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts
@@ -232,6 +232,19 @@ export const buildScaffoldN50 = (
   };
 };
 
+/**
+ * Build props for the strain cell.
+ * @param genome - Genome entity.
+ * @returns Props to be used for the cell.
+ */
+export const buildStrain = (
+  genome: BRCDataCatalogGenome
+): ComponentProps<typeof C.BasicCell> => {
+  return {
+    value: genome.strain,
+  };
+};
+
 /**
  * Build props for the tags cell.
  * @param genome - Genome entity.

diff --git a/site-config/brc-analytics/category.ts b/site-config/brc-analytics/category.ts
@@ -12,6 +12,7 @@ export const BRC_DATA_CATALOG_CATEGORY_KEY = {
   SCAFFOLD_COUNT: "scaffoldCount",
   SCAFFOLD_L50: "scaffoldL50",
   SCAFFOLD_N50: "scaffoldN50",
+  STRAIN: "strain",
   TAGS: "tags",
   TAXON: "taxon",
   TAXONOMY_ID: "ncbiTaxonomyId",
@@ -32,6 +33,7 @@ export const BRC_DATA_CATALOG_CATEGORY_LABEL = {
   SCAFFOLD_COUNT: "Scaffolds",
   SCAFFOLD_L50: "Scaffold L50",
   SCAFFOLD_N50: "Scaffold N50",
+  STRAIN: "Strain",
   TAGS: "Tags",
   TAXON: "Taxon",
   TAXONOMY_ID: "Taxonomy ID",

diff --git a/site-config/brc-analytics/local/index/genomeEntityConfig.ts b/site-config/brc-analytics/local/index/genomeEntityConfig.ts
@@ -33,6 +33,10 @@ export const genomeEntityConfig: BRCEntityConfig<BRCDataCatalogGenome> = {
             key: BRC_DATA_CATALOG_CATEGORY_KEY.TAXON,
             label: BRC_DATA_CATALOG_CATEGORY_LABEL.TAXON,
           },
+          {
+            key: BRC_DATA_CATALOG_CATEGORY_KEY.STRAIN,
+            label: BRC_DATA_CATALOG_CATEGORY_LABEL.STRAIN,
+          },
           {
             key: BRC_DATA_CATALOG_CATEGORY_KEY.TAXONOMY_ID,
             label: BRC_DATA_CATALOG_CATEGORY_LABEL.TAXONOMY_ID,
@@ -103,7 +107,16 @@ export const genomeEntityConfig: BRCEntityConfig<BRCDataCatalogGenome> = {
         } as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
         header: BRC_DATA_CATALOG_CATEGORY_LABEL.TAXON,
         id: BRC_DATA_CATALOG_CATEGORY_KEY.TAXON,
-        width: { max: "1fr", min: "284px" },
+        width: { max: "1fr", min: "240px" },
+      },
+      {
+        componentConfig: {
+          component: C.BasicCell,
+          viewBuilder: V.buildStrain,
+        } as ComponentConfig<typeof C.BasicCell, BRCDataCatalogGenome>,
+        header: BRC_DATA_CATALOG_CATEGORY_LABEL.STRAIN,
+        id: BRC_DATA_CATALOG_CATEGORY_KEY.STRAIN,
+        width: { max: "0.5fr", min: "180px" },
       },
       {
         componentConfig: {