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Update Python dependencies
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@galaxybot
galaxybot authored Dec 2, 2023
1 parent a5b5ebf commit 7c0ecf8
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Showing 4 changed files with 16 additions and 16 deletions.
8 changes: 4 additions & 4 deletions lib/galaxy/dependencies/dev-requirements.txt
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Expand Up @@ -26,7 +26,7 @@ codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.12"
colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt")
contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.12"
coverage[toml]==7.3.2 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.5 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
cwltest==2.4.20231031143732 ; python_version >= "3.8" and python_version < "3.12"
cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.12"
darker==1.7.2 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -46,8 +46,8 @@ httpcore==1.0.2 ; python_version >= "3.8" and python_version < "3.12"
httpx==0.25.2 ; python_version >= "3.8" and python_version < "3.12"
idna==3.6 ; python_version >= "3.8" and python_version < "3.12"
imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.12"
importlib-metadata==6.8.0 ; python_version >= "3.8" and python_version < "3.12"
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.12"
importlib-metadata==6.9.0 ; python_version >= "3.8" and python_version < "3.12"
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.10"
iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.12"
isort==5.12.0 ; python_version >= "3.8" and python_version < "3.12"
Expand Down Expand Up @@ -127,7 +127,7 @@ rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.12"
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.12"
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8"
ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.4.20231117150958 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20231201181309 ; python_version >= "3.8" and python_version < "3.12"
scipy==1.10.1 ; python_version >= "3.8" and python_version < "3.9"
scipy==1.11.4 ; python_version >= "3.9" and python_version < "3.12"
secretstorage==3.3.3 ; python_version >= "3.8" and python_version < "3.12" and sys_platform == "linux"
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2 changes: 1 addition & 1 deletion lib/galaxy/dependencies/pinned-lint-requirements.txt
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@@ -1,6 +1,6 @@
attrs==23.1.0
flake8==6.1.0
flake8-bugbear==23.9.16
flake8-bugbear==23.11.28
mccabe==0.7.0
pycodestyle==2.11.1
pyflakes==3.1.0
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20 changes: 10 additions & 10 deletions lib/galaxy/dependencies/pinned-requirements.txt
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Expand Up @@ -6,7 +6,7 @@ aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.12"
aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.12"
aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.12"
aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.12"
alembic==1.12.1 ; python_version >= "3.8" and python_version < "3.12"
alembic==1.13.0 ; python_version >= "3.8" and python_version < "3.12"
amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.12"
aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.12"
anyio==4.1.0 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -22,7 +22,7 @@ backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
bagit-profile==1.3.1 ; python_version >= "3.8" and python_version < "3.12"
bagit==1.8.1 ; python_version >= "3.8" and python_version < "3.12"
bcrypt==4.0.1 ; python_version >= "3.8" and python_version < "3.12"
bcrypt==4.1.1 ; python_version >= "3.8" and python_version < "3.12"
bdbag==1.7.1 ; python_version >= "3.8" and python_version < "3.12"
beaker==1.12.1 ; python_version >= "3.8" and python_version < "3.12"
billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -48,9 +48,9 @@ cloudbridge==3.2.0 ; python_version >= "3.8" and python_version < "3.12"
colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and platform_system == "Windows"
coloredlogs==15.0.1 ; python_version >= "3.8" and python_version < "3.12"
conda-package-streaming==0.9.0 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.5 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
cwl-upgrader==1.2.10 ; python_version >= "3.8" and python_version < "3.12"
cwl-utils==0.31 ; python_version >= "3.8" and python_version < "3.12"
cwl-utils==0.32 ; python_version >= "3.8" and python_version < "3.12"
cwltool==3.1.20231114134824 ; python_version >= "3.8" and python_version < "3.12"
decorator==5.1.1 ; python_version >= "3.8" and python_version < "3.12"
defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.12"
Expand Down Expand Up @@ -86,14 +86,14 @@ h5grove==1.3.0 ; python_version >= "3.8" and python_version < "3.12"
h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.12"
humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.12"
idna==3.6 ; python_version >= "3.8" and python_version < "3.12"
importlib-metadata==6.8.0 ; python_version >= "3.8" and python_version < "3.12"
importlib-metadata==6.9.0 ; python_version >= "3.8" and python_version < "3.12"
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.12"
isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.12"
isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.12"
jinja2==3.1.2 ; python_version >= "3.8" and python_version < "3.12"
jmespath==1.0.1 ; python_version >= "3.8" and python_version < "3.12"
jsonref==1.1.0 ; python_version >= "3.8" and python_version < "3.12"
jsonschema-specifications==2023.11.1 ; python_version >= "3.8" and python_version < "3.12"
jsonschema-specifications==2023.11.2 ; python_version >= "3.8" and python_version < "3.12"
jsonschema==4.20.0 ; python_version >= "3.8" and python_version < "3.12"
kombu==5.3.4 ; python_version >= "3.8" and python_version < "3.12"
lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.12"
Expand Down Expand Up @@ -156,7 +156,7 @@ pytz==2023.3.post1 ; python_version >= "3.8" and python_version < "3.12"
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.12"
pyzmq==25.1.1 ; python_version >= "3.8" and python_version < "3.12"
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.12"
referencing==0.31.0 ; python_version >= "3.8" and python_version < "3.12"
referencing==0.31.1 ; python_version >= "3.8" and python_version < "3.12"
refgenconf==0.12.2 ; python_version >= "3.8" and python_version < "3.12"
regex==2023.10.3 ; python_version >= "3.8" and python_version < "3.12"
repoze-lru==0.7 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -167,12 +167,12 @@ requests==2.31.0 ; python_version >= "3.8" and python_version < "3.12"
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.12"
rocrate==0.9.0 ; python_version >= "3.8" and python_version < "3.12"
routes==2.5.1 ; python_version >= "3.8" and python_version < "3.12"
rpds-py==0.13.1 ; python_version >= "3.8" and python_version < "3.12"
rpds-py==0.13.2 ; python_version >= "3.8" and python_version < "3.12"
rsa==4.9 ; python_version >= "3.8" and python_version < "3.12"
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8"
ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12"
s3fs==2023.10.0 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.4.20231117150958 ; python_version >= "3.8" and python_version < "3.12"
schema-salad==8.5.20231201181309 ; python_version >= "3.8" and python_version < "3.12"
setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.12"
setuptools==69.0.2 ; python_version >= "3.8" and python_version < "3.12"
shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.12"
Expand All @@ -192,7 +192,7 @@ tenacity==8.2.3 ; python_version >= "3.8" and python_version < "3.12"
tifffile==2023.7.10 ; python_version >= "3.8" and python_version < "3.12"
tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.12"
tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"
tornado==6.3.3 ; python_version >= "3.8" and python_version < "3.12"
tornado==6.4 ; python_version >= "3.8" and python_version < "3.12"
tqdm==4.66.1 ; python_version >= "3.8" and python_version < "3.12"
tuspy==1.0.1 ; python_version >= "3.8" and python_version < "3.12"
tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.12"
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2 changes: 1 addition & 1 deletion lib/galaxy/dependencies/pinned-typecheck-requirements.txt
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@@ -1,5 +1,5 @@
cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.5 ; python_version >= "3.8" and python_version < "3.12"
cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12"
mypy==1.7.1 ; python_version >= "3.8" and python_version < "3.12"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12"
Expand Down

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