sed defined to enable running bulk load under modern perl #3
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| name: Test | |
| on: ["pull_request"] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Build container | |
| run: | | |
| docker build -t chado . | |
| - name: Test Running Container | |
| run: | | |
| docker run -n chado -it -e INSTALL_YEAST_DATA=1 chado & | |
| while true; do | |
| # Check that it's ready to run | |
| start_count=$(docker logs chado | grep 'database system is ready to accept connections' | wc -l) | |
| if (( start_count > 1 )); then | |
| break | |
| fi | |
| done | |
| # Check that yeast is, in fact loaded. | |
| docker exec -it $(docker ps -q) psql -U postgres -c "select * from organism where common_name = 'yeast' " | grep '1 row' | |
| # Done! | |
| exit 0 |