Bump FRASER version 1.1.2 -> 1.1.3

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: FRASER
 Type: Package
 Title: Find RAre Splicing Events in RNA-Seq Data
-Version: 1.1.2
-Date: 2020-06-08
+Version: 1.1.3
+Date: 2020-08-27
 Authors@R: c(
     person("Christian", "Mertes", role=c("aut", "cre"), 
             email="[email protected]"),

NEWS

@@ -1,3 +1,13 @@
+CHANGES IN VERSION 1.1.3
+-------------------------
+
+    o Update and adjust injectOutlier and hyperParameter functions
+    o Option to compute z scores in logit space or not
+    o Add cap value [0.01,0.99] to logit function
+    o Use pairedEnd counting with Rsubread
+    o Correct assayName pajd -> padj
+    o Minor bugfixes
+
 CHANGES IN VERSION 1.1.2
 -------------------------
 

README.md

@@ -2,12 +2,11 @@
 
 [![Build Status](https://travis-ci.com/c-mertes/FRASER.svg?branch=master)](https://travis-ci.com/c-mertes/FRASER)
 [![AppVeyor build status](https://ci.appveyor.com/api/projects/status/371x22cn6fipu7bw/branch/master?svg=true)](https://ci.appveyor.com/project/c-mertes/fraser/branch/master)
-[![Version](https://img.shields.io/badge/Version-1.1.2-green.svg)](https://github.com/gagneurlab/FRASER/tree/master)
-[![Coverage status](https://codecov.io/gh/c-mertes/FRASER/branch/master/graph/badge.svg)](https://codecov.io/github/c-mertes/FRASERbranch=master)
+[![Version](https://img.shields.io/badge/Version-1.1.3-green.svg)](https://github.com/c-mertes/FRASER/tree/master)
+[![Coverage status](https://codecov.io/gh/c-mertes/FRASER/branch/master/graph/badge.svg)](https://codecov.io/github/c-mertes/FRASER/branch/master)
 [![License](https://img.shields.io/github/license/mashape/apistatus.svg?maxAge=2592000)](https://github.com/gagneurlab/OUTRIDER/blob/master/LICENSE)
 
-FRASER is a tool to detect aberrant splicing events in RNA-seq data. The method is described in a preprint on [bioRxiv](https://www.biorxiv.org/content/10.1101/2019.12.18.866830v1) and available through [Bioconductor](http://bioconductor.org/packages/release/bioc/html/FRASER.html).
-
+FRASER is a tool to detect aberrant splicing events in RNA-seq data. The method is described in a preprint on [bioRxiv](https://www.biorxiv.org/content/10.1101/2019.12.18.866830v1) and available through [Bioconductor](http://bioconductor.org/packages/release/bioc/html/FRASER.html). It is also part of the [Detection of RNA Outlier Pipeline (DROP)](https://github.com/gagneurlab/drop). The DROP pipeline is described [here on Nature's protocol exchange](https://doi.org/10.21203/rs.2.19080/v1).
 
 The FRASER framework and workflow aims to assist the diagnostics in the field of rare diseases where RNA-seq is performed to identify aberrant splicing defects. For a short tutorial on how to use FRASER on a dataset please use the [vignette](http://bioconductor.org/packages/release/bioc/vignettes/FRASER/inst/doc/FRASER.pdf) or our Colab tutorial at: [http://tinyurl.com/RNA-ASHG-colab](http://tinyurl.com/RNA-ASHG-colab). The Colab is based on a workshop that we presented at ASHG 2019.
 
@@ -37,7 +36,7 @@ if (!requireNamespace("devtools", quietly=TRUE))
 devtools::install_github('gagneurlab/FRASER', dependencies=TRUE)
 
 # or a specific version of FRASER (search for tags on github)
-devtools::install_github('gagneurlab/FRASER', ref='1.1.2', dependencies=TRUE)
+devtools::install_github('gagneurlab/FRASER', ref='1.1.3', dependencies=TRUE)
 ```
 
 If you have dependency issues while installing any package, please have a look