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fmalmeida/MpGAP v3.0.1
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@fmalmeida fmalmeida released this 10 Nov 15:48
· 236 commits to master since this release
v3.0.1
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The pipeline

MpGAP, is a very customisable (easy to use) pipeline that uses state-of-the-art software for the de novo assembly of sequencing reads. It is capable of performing short reads only, long reads only and hybrid assemblies using data from Illumina, Pacbio and Oxford Nanopore Technologies sequencing platforms. As a plus, it has only Docker and Nextflow as dependencies.

Relase notes

Super small fix to properly load YAML file when using the pipeline with cloud computing environments such as AWS/S3-bucket:

# from
parameter_yaml = new FileInputStream(new File(params.input))
# to
parameter_yaml = file(params.input).readLines().join("\n")
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