Develop #67
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| name: Documentation | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: '*' | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: '1.9.2' | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/FlavellBase.jl | |
| path: ./FlavellBase.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/TotalVariation.jl | |
| path: ./TotalVariation.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/SegmentationStats.jl | |
| path: ./SegmentationStats.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/GPUFilter.jl | |
| path: ./GPUFilter.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/NRRDIO.jl | |
| path: ./NRRDIO.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/FFTRegGPU.jl | |
| path: ./FFTRegGPU.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/ImageDataIO.jl | |
| path: ./ImageDataIO.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/UNet2D.jl | |
| path: ./UNet2D.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/WormCurveFinder.jl | |
| path: ./WormCurveFinder.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/Clustering.jl | |
| path: ./Clustering.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/WormFeatureDetector.jl | |
| path: ./WormFeatureDetector.jl | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - uses: actions/checkout@master | |
| with: | |
| repository: flavell-lab/unet2d | |
| path: ./unet2d | |
| token: ${{ secrets.GOLDENRATIO1618_ACCESS_TOKEN }} | |
| - name: Install Julia Python environment | |
| run: julia --project=docs/ -e 'using Pkg; | |
| Pkg.add("PyCall"); | |
| ENV["PYTHON"] = ""; | |
| Pkg.build("PyCall"); | |
| Pkg.add("PyPlot"); | |
| Pkg.build("PyPlot");' | |
| - name: Setup python packages | |
| run: ~/.julia/conda/3/x86_64/bin/pip install torch==1.13.1 torchvision torchaudio; | |
| cd unet2d; | |
| ~/.julia/conda/3/x86_64/bin/pip install . | |
| - name: Install packages | |
| run: julia --project=docs/ -e 'using Pkg; | |
| Pkg.add(PackageSpec(path="./FlavellBase.jl")); | |
| Pkg.add(PackageSpec(path="./TotalVariation.jl")); | |
| Pkg.add(PackageSpec(path="./SegmentationStats.jl")); | |
| Pkg.add(PackageSpec(path="./GPUFilter.jl")); | |
| Pkg.add(PackageSpec(path="./NRRDIO.jl")); | |
| Pkg.add(PackageSpec(path="./FFTRegGPU.jl")); | |
| Pkg.add(PackageSpec(path="./ImageDataIO.jl")); | |
| Pkg.add(PackageSpec(path="./UNet2D.jl")); | |
| Pkg.add(PackageSpec(path="./WormCurveFinder.jl")); | |
| Pkg.add(PackageSpec(path="./Clustering.jl")); | |
| Pkg.add(PackageSpec(path="./WormFeatureDetector.jl")); | |
| Pkg.add(PackageSpec(path=pwd())); Pkg.instantiate()' | |
| - name: Build and deploy | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # For authentication with SSH deploy key | |
| run: julia --project=docs/ docs/make.jl |