CePNEMAnalysis.jl

This package provides a collection of tools for interpreting and visualizing CePNEM model fits. It comes with four companion notebooks (available in the notebook directory in this package):

• CePNEM-analysis.ipynb: Loads raw CePNEM fit data and computes metrics such as neural encoding, encoding change, variability, and more.
• CePNEM-plots.ipynb: Presents the most common plots used to visualize CePNEM fits, as well as a guide to exploring neural encodings generated from the CePNEM-analysis.ipynb notebook. This notebook can also be used by downloading our preprocessed data from wormwideweb.org and examining it here.
• CePNEM-UMAP.ipynb: Demonstrates how to use UMAP to visualize CePNEM fits.
• CePNEM-auxiliary.ipynb: Presents less-commonly used plots and functions, such as model validation metrics, decoder training, and more.

Citation

To cite this work, please refer to this article.

Data download

To download our preprocessed data compatible with loading into our notebooks, please see the .jld2 files here.