Update other dependencies

except for:

- chai 5 requires import as module, its plugins depend on chai 5,
  (try to update later or better migrate to jest),
- react 18 and redux require changes in miew-app,
  (try to fix the app),
- testing-library depends on react 18,
  (try to update later),
- eslint 9 is incompatible with old plugins including airbnb,
  (try to get rid of plugins),
- bootstrap 5 is too different from 3 and 4,
  (try to migrate 4 to 5 or avoid bootstrap at all; keep 3 as legacy),
- bootstrap-switch 3.4 has issues but is no longer updated,
  (find a different component),
- glob 11 and rimraf 6 force node 20,
  (wait until we are ready to drop node 18),
- threejs 154+ is a separate long story including migration to WebGL 2,
  (try to update later).

package.json

@@ -17,9 +17,9 @@
     "ci": "yarn workspaces foreach -ptv run ci"
   },
   "devDependencies": {
-    "lcov-result-merger": "^5.0.0",
+    "lcov-result-merger": "^5.0.1",
     "mkdirp": "^3.0.1",
-    "rimraf": "^5.0.5"
+    "rimraf": "^5.0.10"
   },
   "packageManager": "[email protected]",
   "resolutions": {

packages/miew-app/package.json

@@ -36,7 +36,7 @@
     ]
   },
   "dependencies": {
-    "bootstrap": "^4.5.0",
+    "bootstrap": "^4.6.2",
     "bootstrap-switch-button-react": "^1.2.0",
     "classnames": "^2.5.1",
     "jquery": "^3.7.1",
@@ -54,7 +54,7 @@
     "@babel/preset-env": "^7.25.3",
     "@babel/preset-react": "^7.24.7",
     "@testing-library/react": "^12.1.5",
-    "babel-jest": "^26.0.0",
+    "babel-jest": "^29.7.0",
     "babel-loader": "^9.1.3",
     "copy-webpack-plugin": "^12.0.2",
     "css-loader": "^7.1.2",
@@ -71,7 +71,7 @@
     "postcss-loader": "^8.1.1",
     "postcss-scss": "^4.0.9",
     "redux": "^4.2.1",
-    "rimraf": "^5.0.5",
+    "rimraf": "^5.0.10",
     "style-loader": "^4.0.0",
     "webpack": "^5.93.0",
     "webpack-cli": "^5.1.4",

packages/miew-react/package.json

@@ -55,7 +55,7 @@
     "npm-run-all": "^4.1.5",
     "postcss": "^8.4.41",
     "postcss-loader": "^8.1.1",
-    "prettier": "^3.2.5",
+    "prettier": "^3.3.3",
     "react": "^18.3.1",
     "react-dom": "^18.3.1",
     "style-loader": "^4.0.0",

packages/miew/package.json

@@ -83,21 +83,21 @@
     "instrument": false
   },
   "dependencies": {
-    "lodash": "^4.17.15",
+    "lodash": "^4.17.21",
     "three": "0.153.0"
   },
   "devDependencies": {
     "@babel/core": "^7.25.2",
     "@babel/eslint-parser": "^7.25.1",
     "@babel/register": "^7.24.6",
-    "autoprefixer": "=10.4.5",
+    "autoprefixer": "^10.4.20",
     "babel-loader": "^9.1.3",
     "babel-plugin-istanbul": "^7.0.0",
-    "bootstrap": "^3.3.7",
+    "bootstrap": "^3.4.1",
     "bootstrap-switch": "=3.3.4",
     "browserify": "^17.0.0",
-    "chai": "^4.2.0",
-    "chai-as-promised": "^7.1.1",
+    "chai": "^4.5.0",
+    "chai-as-promised": "^7.1.2",
     "copy-webpack-plugin": "^12.0.2",
     "cross-env": "^7.0.3",
     "css-loader": "^7.1.2",
@@ -108,21 +108,21 @@
     "eslint-plugin-import": "^2.29.1",
     "eslint-plugin-react": "^7.35.0",
     "express": "^4.19.2",
-    "glob": "^10.3.10",
+    "glob": "^10.4.5",
     "handlebars": "^4.7.8",
     "html-webpack-plugin": "^5.6.0",
     "jison": "^0.4.18",
     "jquery": "^3.7.1",
     "jquery.terminal": "^2.42.2",
-    "jsdoc": "^4.0.2",
+    "jsdoc": "^4.0.3",
     "mini-css-extract-plugin": "^2.9.1",
     "mkdirp": "^3.0.1",
-    "mocha": "^10.3.0",
+    "mocha": "^10.7.3",
     "ncp": "^2.0.0",
     "node-resemble-js": "^0.2.0",
     "npm-run-all": "^4.1.5",
-    "nyc": "^15.1.0",
-    "open": "^10.0.3",
+    "nyc": "^17.0.0",
+    "open": "^10.1.0",
     "postcss": "^8.4.41",
     "postcss-advanced-variables": "^4.0.0",
     "postcss-calc": "^10.0.2",
@@ -134,14 +134,14 @@
     "proxyquire": "^2.1.3",
     "react": "^16.14.0",
     "react-dom": "^16.14.0",
-    "rimraf": "^5.0.5",
-    "selenium-webdriver": "^4.18.1",
-    "sinon": "^17.0.1",
+    "rimraf": "^5.0.10",
+    "selenium-webdriver": "^4.23.0",
+    "sinon": "^18.0.0",
     "sinon-chai": "^3.7.0",
-    "spin.js": "^4.1.0",
+    "spin.js": "^4.1.2",
     "style-loader": "^4.0.0",
-    "stylelint": "^16.2.1",
-    "stylelint-config-standard-scss": "^13.0.0",
+    "stylelint": "^16.8.2",
+    "stylelint-config-standard-scss": "^13.1.0",
     "terser-webpack-plugin": "^5.3.10",
     "toastr": "^2.1.4",
     "webpack": "^5.93.0",